genome.fa.s6638.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006638.1 Hibiscus syriacus cultivar Beakdansim tig00016349_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  193951

Tables:   1   2   

This is table  1  of  2  ( 169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380--473	42	2.3	42	80	7	104	23	23	22	30	1.99
646--1245	248	2.4	248	88	2	866	30	16	17	35	1.93
1136--1219	42	2.0	42	84	9	109	23	19	16	40	1.91
1413--1456	3	15.0	3	85	4	54	38	2	0	59	1.10
1421--1464	20	2.1	20	87	8	61	45	4	0	50	1.22
12853--13058	74	2.9	70	81	12	212	49	5	5	39	1.50
12853--12986	69	1.9	69	89	5	209	47	5	5	41	1.50
15136--15205	32	2.2	32	87	5	97	41	0	31	27	1.56
17122--17186	2	33.0	2	77	14	64	47	0	7	44	1.31
17118--17200	39	2.2	39	77	12	95	43	1	8	46	1.41
17256--17281	2	13.0	2	100	0	52	50	0	0	50	1.00
21719--21760	21	2.0	21	90	4	68	23	4	0	71	1.05
21722--21766	20	2.2	21	84	4	56	22	6	2	68	1.24
21791--21838	21	2.3	21	85	7	62	62	0	2	35	1.07
40964--41027	26	2.5	26	97	0	119	34	10	15	39	1.83
47026--47100	20	3.5	20	73	18	62	21	25	26	26	1.99
54656--54723	29	2.3	29	97	0	127	50	5	13	30	1.65
55014--55116	21	4.9	21	72	3	82	34	22	18	24	1.96
55077--55295	62	3.6	60	74	8	163	38	25	16	19	1.93
55077--55293	20	10.6	20	73	12	154	38	25	17	19	1.93
55137--55291	41	3.8	41	93	0	274	40	25	16	18	1.91
55095--55291	82	2.4	83	89	2	290	38	25	16	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56079--56309	20	11.5	19	82	8	228	39	22	16	20	1.92
56079--56309	40	5.8	40	90	0	309	39	22	16	20	1.92
56079--56309	60	3.8	60	91	4	351	39	22	16	20	1.92
56999--57052	24	2.2	24	90	0	81	22	16	20	40	1.91
57227--57251	12	2.1	12	100	0	50	72	0	28	0	0.86
59553--59686	33	3.8	33	76	16	108	44	18	21	15	1.87
59586--59767	20	9.7	19	74	21	170	43	18	21	15	1.87
59600--59627	14	2.0	14	100	0	56	50	21	14	14	1.78
59586--59737	33	4.2	39	80	15	143	45	17	21	15	1.85
59713--59762	24	2.1	24	100	0	100	42	20	20	18	1.90
59776--59907	19	7.4	19	72	19	122	13	21	17	46	1.82
59757--59907	33	4.4	33	80	11	194	13	23	17	45	1.84
59758--59903	53	2.8	53	74	12	181	13	23	17	45	1.83
60014--60050	14	2.6	14	91	0	65	45	21	0	32	1.52
60017--60192	84	2.1	84	96	0	325	44	18	2	34	1.65
60101--60134	14	2.4	14	90	0	59	44	20	0	35	1.52
61486--61546	21	2.9	21	72	0	68	19	16	36	27	1.93
61486--61574	42	2.1	42	81	8	101	20	17	34	26	1.95
62047--62123	19	4.3	19	76	15	92	49	20	20	9	1.76
62047--62158	52	2.2	52	90	0	170	48	23	19	8	1.77
62092--62155	33	1.9	33	90	0	101	48	25	17	9	1.76
62092--62155	19	3.7	17	78	20	62	48	25	17	9	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62155--62198	19	2.3	19	92	0	70	11	15	29	43	1.82
62164--62231	19	3.9	18	79	18	81	7	17	27	47	1.74
62170--62295	33	3.8	33	90	0	189	9	19	23	46	1.79
62202--62295	19	5.5	19	68	23	82	10	21	21	46	1.81
62222--62278	14	3.7	14	72	20	51	10	21	21	47	1.80
62384--62668	94	3.1	93	92	2	464	48	18	11	21	1.79
64367--64497	20	6.9	20	77	15	129	45	19	23	12	1.84
64365--64492	40	3.4	39	83	11	153	46	18	23	11	1.82
64365--64492	33	3.5	34	79	17	132	46	18	23	11	1.82
64727--64788	32	1.9	31	83	6	79	59	11	4	24	1.51
65094--65229	20	6.7	20	74	12	116	18	18	23	39	1.92
65115--65307	40	4.8	40	80	8	160	20	18	24	36	1.95
65089--65203	60	1.9	61	87	1	169	19	19	24	37	1.94
65115--65246	40	3.3	40	88	6	178	20	18	23	37	1.94
65153--65266	20	5.6	20	77	10	113	17	19	25	37	1.93
65115--65247	41	3.3	41	89	5	166	20	18	23	37	1.94
65275--65327	20	2.7	20	91	5	81	13	18	24	43	1.86
73749--74178	137	3.0	139	85	7	537	34	12	17	35	1.88
74139--74208	32	2.2	32	86	0	95	42	7	24	25	1.80
74009--74339	175	1.9	175	86	2	477	35	10	19	34	1.86
74394--74464	36	2.1	35	84	7	92	36	7	14	42	1.72
82455--82497	15	2.9	15	89	0	68	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83024--83068	3	15.0	3	100	0	90	66	0	33	0	0.92
85061--85104	21	2.1	21	86	0	61	25	0	20	54	1.45
85112--85181	34	2.1	33	89	2	104	52	2	5	38	1.40
86925--86955	2	15.5	2	100	0	62	51	0	0	48	1.00
88970--88998	2	14.5	2	100	0	58	48	0	0	51	1.00
94671--94857	60	3.1	59	77	10	173	41	6	19	32	1.77
96653--96704	21	2.5	21	81	3	61	38	19	25	17	1.93
96693--96806	20	5.7	20	83	6	113	31	25	18	24	1.97
96690--96806	61	1.9	61	85	0	162	33	24	17	23	1.97
97400--97597	19	11.1	19	76	14	147	12	20	21	45	1.83
97512--97548	14	2.6	14	95	0	65	10	24	24	40	1.87
97460--97534	33	2.3	33	78	0	87	10	20	26	42	1.84
97479--97572	47	2.0	48	89	2	145	11	23	25	39	1.88
97540--97597	20	2.9	20	80	10	64	13	24	18	43	1.87
101077--101112	14	2.6	14	95	0	63	30	0	25	44	1.54
101295--101421	33	3.9	32	85	8	175	14	22	18	44	1.87
101291--101421	19	7.7	19	63	23	76	14	22	19	44	1.86
101288--101420	66	2.0	66	94	0	230	16	21	18	42	1.89
103909--103962	24	2.2	24	90	0	81	38	20	16	24	1.92
105016--105066	20	2.5	20	93	0	84	37	27	19	15	1.92
105016--105073	20	2.9	20	87	5	82	41	24	18	15	1.89
105097--105150	14	3.5	14	75	22	54	11	18	20	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105079--105149	33	2.2	33	81	0	79	19	18	21	40	1.91
105092--105141	14	3.1	16	74	25	59	12	22	18	48	1.80
105092--105169	33	2.4	33	88	0	111	12	21	21	43	1.86
105257--105293	14	2.6	14	86	0	56	48	21	0	29	1.50
107162--107228	19	3.5	19	83	4	80	37	22	23	16	1.94
107162--107217	20	2.9	19	86	5	85	35	21	25	17	1.95
107217--107274	14	3.9	14	79	16	71	48	25	17	8	1.75
107201--107279	32	2.4	33	95	2	142	46	24	18	10	1.80
107289--107366	18	4.5	18	79	14	101	14	20	20	44	1.85
107351--107394	20	2.2	20	84	4	54	20	25	18	36	1.95
107893--107937	18	2.5	18	85	0	63	15	15	42	26	1.87
109253--109295	20	2.2	20	86	0	59	48	20	18	11	1.79
109574--109617	22	2.0	22	95	0	79	20	18	43	18	1.89
109805--109857	20	2.7	20	85	5	72	28	18	26	26	1.98
109785--109899	20	5.7	19	75	9	68	25	17	23	33	1.96
109888--109980	20	4.5	21	75	4	91	18	24	17	39	1.91
109827--109961	41	3.3	41	81	4	130	20	21	20	37	1.94
109891--109980	41	2.2	41	97	0	171	18	24	16	40	1.91
110651--110718	19	3.8	19	77	14	83	48	14	22	14	1.80
110737--110794	20	2.9	20	97	0	107	15	22	24	37	1.93
111847--111900	24	2.2	24	90	0	81	24	16	20	38	1.92
112075--112099	12	2.1	12	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114391--114488	19	5.7	19	65	22	72	41	20	22	15	1.89
114392--114491	33	3.0	33	84	11	150	40	20	22	18	1.92
114484--114526	20	2.2	20	87	4	61	16	18	23	41	1.89
114512--114545	14	2.4	14	85	0	50	8	23	20	47	1.78
114667--114703	14	2.6	14	91	0	65	45	24	0	29	1.53
116057--116123	21	3.2	21	68	4	55	19	20	35	23	1.95
116096--116175	42	1.9	42	84	0	106	23	17	37	21	1.94
117817--117902	33	2.6	33	88	1	127	38	25	23	12	1.90
117887--117951	19	3.4	19	91	0	112	50	20	16	12	1.77
117957--117993	19	1.9	19	94	0	65	2	16	24	56	1.53

Tables:   1   2