genome.fa.s6638.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006638.1 Hibiscus syriacus cultivar Beakdansim tig00016349_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  193951

Tables:   1   2   

This is table  2  of  2  ( 169 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118547--118599	20	2.7	20	90	0	79	28	20	26	24	1.99
118608--118661	20	2.7	20	97	0	99	25	18	24	31	1.97
118548--118682	61	2.2	61	80	2	146	23	20	23	32	1.98
118732--118772	21	2.0	21	85	0	55	34	31	17	17	1.93
122585--122713	43	3.0	43	85	4	170	54	22	3	20	1.58
129612--129754	65	2.2	64	85	8	193	32	16	20	30	1.95
130358--130414	27	2.1	27	83	0	69	57	14	3	24	1.52
132394--132473	23	3.6	22	76	6	90	26	23	22	27	2.00
137865--138012	65	2.3	64	85	8	194	33	17	20	28	1.96
147752--148159	58	7.0	57	80	6	335	37	6	13	43	1.69
147811--148164	118	3.0	119	76	8	307	37	6	13	42	1.69
148333--148647	175	1.8	172	80	8	377	38	6	14	40	1.71
148516--148790	39	6.7	40	77	11	245	38	7	13	40	1.73
152053--152148	20	4.8	20	93	0	165	38	13	20	27	1.90
152132--152239	20	5.4	20	87	0	144	28	25	18	26	1.98
152053--152238	60	3.1	60	80	7	148	33	19	19	26	1.96
153052--153105	24	2.2	24	93	0	90	20	18	20	40	1.91
155555--155727	20	9.2	20	73	14	154	34	20	17	27	1.95
155563--155719	54	2.9	54	91	0	242	35	22	17	24	1.96
155617--155789	74	2.4	74	85	1	222	34	21	19	24	1.96
155782--155820	20	2.0	20	94	0	69	12	20	20	46	1.83
155957--155995	14	2.8	14	96	0	69	46	17	0	35	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157395--157505	42	2.6	42	76	5	109	23	18	37	19	1.94
157988--158034	20	2.5	18	89	6	67	34	27	19	19	1.96
158077--158144	20	3.4	20	93	0	109	17	16	26	39	1.90
158292--158341	18	2.8	18	93	0	82	46	6	16	32	1.71
160066--160106	20	2.0	20	95	0	73	56	12	14	17	1.68
160098--160181	20	4.2	20	86	3	98	39	23	19	17	1.92
160574--160630	22	2.6	22	80	0	78	19	17	42	21	1.90
160779--160864	20	4.3	20	93	0	145	25	22	26	25	2.00
160856--160899	20	2.2	20	87	0	61	31	18	11	38	1.86
160864--160911	20	2.4	20	86	10	71	27	18	12	41	1.86
160909--160948	21	1.9	21	94	0	71	42	20	20	17	1.89
163102--163142	18	2.3	18	91	4	66	29	4	2	63	1.28
164769--164807	18	2.2	18	95	0	69	28	30	17	23	1.97
165154--165197	3	14.7	3	80	0	52	36	25	31	6	1.82
165157--165204	15	3.2	15	90	0	69	35	22	31	10	1.88
169952--169995	17	2.5	17	81	3	52	59	4	0	36	1.18
170453--170500	15	3.3	15	94	2	80	39	8	14	37	1.76
172915--172977	26	2.4	25	82	10	65	30	1	3	65	1.18
183752--183778	2	13.5	2	100	0	54	48	0	0	51	1.00
184002--184032	16	1.9	16	100	0	62	58	22	12	6	1.58
184103--184147	16	2.8	16	82	0	63	60	20	11	8	1.57
191218--192320	94	11.2	95	85	10	1404	34	25	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191218--192349	197	5.7	199	93	4	1775	34	25	17	23	1.96
191728--191887	43	3.6	43	68	11	131	35	25	18	21	1.96
191929--192084	43	3.4	43	67	13	132	35	25	18	21	1.96
191821--192349	106	5.2	106	90	6	826	34	25	17	22	1.96
192980--193075	37	2.6	37	81	8	106	43	6	5	44	1.51

Tables:   1   2

The End!