genome.fa.s6640.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006640.1 Hibiscus syriacus cultivar Beakdansim tig00016353_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  182799

Tables:   1   2   

This is table  2  of  2  ( 151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126275--126419	64	2.2	66	84	7	181	26	20	22	30	1.98
127206--127288	33	2.5	34	76	18	86	71	4	3	20	1.20
129354--129379	7	3.7	7	100	0	52	42	15	0	42	1.47
135412--135455	23	1.9	23	90	0	70	25	22	27	25	2.00
135434--135738	149	2.0	149	91	2	488	36	20	16	27	1.93
136348--136372	5	5.0	5	100	0	50	20	20	0	60	1.37
136631--136665	18	1.9	18	88	11	54	22	17	5	54	1.64
138527--138652	54	2.3	54	85	5	157	30	22	17	30	1.96
138641--138694	20	2.7	20	91	5	83	31	27	14	25	1.95
138642--138713	20	3.5	20	86	7	74	34	26	12	26	1.92
149634--149686	21	2.5	22	78	9	56	30	20	16	32	1.95
149853--149902	24	2.1	24	82	14	59	30	22	10	38	1.86
151313--151351	20	2.0	21	90	10	64	17	2	25	53	1.56
153923--153982	23	2.7	23	78	19	65	30	23	21	25	1.99
153946--154001	23	2.4	23	80	11	69	30	25	23	21	1.99
154650--154702	20	2.7	20	96	0	97	32	28	15	24	1.95
155566--155613	23	2.1	22	88	3	69	27	18	25	29	1.98
155793--155842	21	2.4	21	89	0	73	28	24	10	38	1.87
156938--156975	4	9.5	4	94	0	67	73	0	23	2	0.95
163006--163059	20	2.6	20	82	5	63	25	29	22	22	1.99
163149--163208	22	2.8	21	82	9	77	31	25	16	26	1.96
169650--169679	2	15.0	2	100	0	60	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177207--177278	18	3.8	18	69	26	60	45	8	2	43	1.48
177498--177704	113	1.8	113	93	2	362	37	13	19	29	1.89
178647--178688	17	2.5	17	84	0	57	42	11	14	30	1.81
179305--179348	24	1.9	24	90	9	74	52	9	4	34	1.54
179723--180131	53	7.7	53	86	6	438	35	17	11	35	1.85
179723--180131	108	3.8	107	86	5	501	35	17	11	35	1.85
179723--180131	161	2.6	160	85	5	517	35	17	11	35	1.85
180527--180595	20	3.4	19	72	20	59	31	23	11	33	1.90
180537--180595	19	3.0	20	69	20	52	32	20	11	35	1.89

Tables:   1   2

The End!