genome.fa.s6642.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006642.1 Hibiscus syriacus cultivar Beakdansim tig00016355_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46266

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--5392	4	1386.5	4	89	8	8477	48	25	0	24	1.52
5719--6041	101	3.3	101	79	12	257	32	17	9	40	1.81
5745--5988	103	2.4	102	85	8	327	29	16	11	42	1.83
7615--7648	13	2.6	13	90	0	50	26	8	29	35	1.87
7999--8040	12	3.4	12	81	12	50	30	2	14	52	1.54
8711--8767	27	2.1	27	80	6	62	33	15	14	36	1.88
8782--8860	31	2.5	31	82	11	83	32	18	12	35	1.89
8801--8860	32	1.9	31	86	10	86	31	20	11	36	1.88
8897--8963	28	2.3	29	92	2	109	23	10	13	52	1.71
8916--8979	28	2.3	28	83	0	83	28	17	15	39	1.90
10860--10932	29	2.5	30	81	2	76	17	9	12	60	1.58
10905--11033	30	4.3	30	80	3	109	18	11	13	56	1.66
15809--15868	29	2.1	29	83	0	75	65	8	13	13	1.48
17083--17133	17	3.2	17	83	8	54	1	13	1	82	0.85
17558--17599	11	3.9	11	93	6	77	0	19	42	38	1.51
17543--17602	11	5.6	10	86	9	75	0	16	41	41	1.48
17642--17680	3	13.0	3	89	10	62	66	0	0	33	0.92
17646--17677	16	2.0	16	100	0	64	68	0	0	31	0.90
17864--18353	40	11.6	41	71	17	275	24	18	31	25	1.97
17900--18313	88	4.8	88	73	15	312	24	19	31	24	1.98
17884--18399	128	4.0	128	97	0	960	24	18	31	24	1.97
18487--18606	63	1.9	63	85	11	165	41	12	17	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18594--18673	36	2.3	35	82	10	92	38	15	17	28	1.90
18746--18867	63	2.0	61	86	3	172	42	11	15	30	1.82
19045--19244	67	3.0	66	86	5	224	44	13	11	31	1.79
19107--19227	37	3.5	37	68	15	112	44	10	10	33	1.74
19087--19244	67	2.3	67	92	2	253	44	12	10	32	1.76
19216--19272	27	2.1	27	90	6	89	43	17	7	31	1.76
19259--19361	52	2.0	52	92	5	172	36	17	13	32	1.89
19372--19563	28	6.8	28	90	2	260	45	15	11	28	1.80
19372--19563	57	3.4	56	85	5	253	45	15	11	28	1.80
19805--19908	36	3.0	36	81	4	124	35	11	20	32	1.88
19918--20114	105	1.9	105	88	2	297	39	10	19	29	1.86
20081--20217	36	3.8	36	82	5	170	35	13	19	31	1.90
20081--20215	71	1.9	72	87	4	202	34	13	20	31	1.91
20595--20646	16	3.5	16	80	20	76	26	0	26	46	1.53
20573--20647	28	2.8	27	92	6	125	25	0	26	48	1.52
21831--21865	12	2.8	13	82	8	54	5	14	11	68	1.37
22484--22563	26	3.3	26	66	20	73	43	10	22	23	1.83
22472--22565	46	2.1	45	89	2	143	39	9	24	26	1.86
26972--27031	29	2.1	29	83	0	75	65	8	13	13	1.48
28248--28297	17	3.1	17	83	8	52	2	14	2	82	0.86
28725--28766	11	3.9	11	93	6	77	0	19	42	38	1.51
28710--28769	11	5.6	10	86	9	75	0	16	41	41	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28809--28844	19	1.9	19	94	5	65	66	0	0	33	0.92
28809--28844	3	12.0	3	88	11	56	66	0	0	33	0.92
33625--33697	2	38.5	2	71	28	54	43	1	4	50	1.29
33626--33697	5	13.8	5	72	18	58	43	1	4	51	1.29
33841--33945	19	5.2	19	80	13	111	34	4	28	32	1.78
34251--34284	12	3.1	11	91	8	52	0	17	52	29	1.45
34488--34549	5	12.0	5	73	13	54	40	0	3	56	1.15
34477--34515	19	2.1	19	85	0	51	30	5	2	61	1.31
34520--34553	11	3.2	10	91	4	50	38	0	2	58	1.13
36540--36593	26	2.1	26	89	0	81	18	16	18	46	1.85
39957--39981	11	2.3	11	100	0	50	24	8	36	32	1.84
41405--41472	21	2.9	23	77	18	70	29	7	0	63	1.21

Tables:   1

The End!