Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006660.1 Hibiscus syriacus cultivar Beakdansim tig00016481_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68636

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
220--248
14
2.0
15
93
6
51
6
34
0
58
1.25
25620--25780
78
2.1
78
84
4
209
36
12
9
41
1.76
26088--26126
19
2.1
19
100
0
78
53
5
10
30
1.56
34210--34288
32
2.6
31
92
6
126
20
22
37
18
1.94
34918--34958
16
2.6
15
92
7
64
75
0
2
21
0.92
34925--34971
12
3.9
12
81
8
51
70
2
0
27
0.99
34931--34984
16
3.7
15
74
20
51
68
3
1
25
1.16
36467--36840
36
10.4
36
75
15
262
44
7
2
44
1.47
36604--36840
74
3.2
74
81
7
261
43
8
2
44
1.49
37432--39059
165
9.8
163
85
5
1489
23
21
25
29
1.99
37427--39059
249
6.6
242
83
6
1460
24
21
25
29
1.99
37563--39018
414
3.5
414
98
0
2761
24
20
25
29
1.99
42075--42120
19
2.4
19
100
0
92
67
10
10
10
1.43
43951--44070
49
2.4
47
75
18
111
72
3
7
16
1.21
44079--44119
16
2.6
15
92
7
64
75
0
2
21
0.92
44086--44132
12
3.9
12
81
8
51
70
2
0
27
0.99
44092--44145
16
3.7
15
74
20
51
68
3
1
25
1.16
44161--44205
20
2.2
21
84
11
58
77
0
6
15
0.96
45594--45640
22
2.1
22
85
14
62
57
6
0
36
1.24
45632--45705
31
2.3
33
86
6
100
47
6
0
45
1.29
45689--45924
38
6.5
36
80
13
156
44
7
3
44
1.48
45623--45994
74
5.2
74
77
12
300
44
7
2
44
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45623--45966
36
9.6
37
74
15
251
44
7
3
45
1.48
46069--46147
32
2.6
31
90
6
117
20
21
37
20
1.94
46351--46420
27
2.4
29
93
6
117
34
0
24
41
1.55
46678--46709
13
2.4
14
85
15
50
59
0
0
40
0.97
46740--47348
275
2.2
279
90
2
958
31
8
21
38
1.84
47371--47484
56
2.0
56
94
0
201
33
28
8
29
1.87
48168--48237
27
2.4
30
93
6
119
41
24
0
34
1.55
48441--48519
32
2.6
31
92
6
126
18
37
22
20
1.94
49332--49401
30
2.2
31
85
12
88
52
1
11
34
1.46
50984--51044
21
3.2
21
65
29
64
31
4
21
42
1.74
50976--51094
35
3.3
37
88
8
174
31
5
19
43
1.72
55614--55674
21
3.2
21
65
29
64
31
4
21
42
1.74
55606--55724
35
3.3
37
88
8
174
31
5
19
43
1.72
56818--56871
22
2.4
22
90
3
81
25
46
12
14
1.81
58986--59032
2
24.0
2
95
4
87
48
0
0
51
1.00
65801--65844
13
3.5
13
84
6
63
18
50
15
15
1.79
65800--65844
12
3.5
13
80
17
58
20
48
15
15
1.80
65861--65900
2
20.5
2
94
5
73
50
0
0
50
1.00
65856--65905
8
6.9
7
91
8
50
52
0
0
48
1.00
65912--65951
19
2.1
19
85
0
53
55
0
0
45
0.99
65970--66015
12
3.9
12
88
2
67
30
47
10
10
1.73
65970--66015
24
2.0
24
91
4
76
30
47
10
10
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68141--68174
2
17.5
2
93
6
61
47
0
0
52
1.00

Tables:   1

The End!