genome.fa.s668.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000668.1 Hibiscus syriacus cultivar Beakdansim tig00001300_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  188710

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6224--6312	24	3.7	24	80	0	79	42	17	13	25	1.86
7439--7477	18	2.2	18	85	0	51	33	15	0	51	1.44
8791--8827	18	2.1	18	94	0	65	13	21	48	16	1.80
21624--21765	38	3.7	38	92	1	230	22	18	22	36	1.95
28375--28456	21	4.0	21	80	1	103	24	15	25	34	1.95
28586--28622	6	6.2	6	100	0	74	35	48	16	0	1.46
35053--35092	21	1.9	21	89	0	62	25	40	25	10	1.86
38740--38776	6	6.2	6	100	0	74	0	16	48	35	1.46
38923--38991	21	3.3	21	67	4	68	36	26	15	21	1.94
41099--41138	2	20.0	2	100	0	80	50	0	0	50	1.00
46897--47052	31	5.0	31	87	3	217	36	21	20	21	1.95
46897--47050	62	2.5	62	91	4	249	36	21	20	21	1.95
47230--47276	23	2.0	24	91	4	78	34	21	0	44	1.52
47875--47919	21	2.1	21	87	0	63	15	24	28	31	1.96
50681--50836	31	5.0	31	87	3	217	36	21	20	21	1.95
50681--50834	62	2.5	62	91	4	249	36	21	20	21	1.95
51014--51060	23	2.0	24	91	4	78	34	21	0	44	1.52
51660--51704	21	2.1	21	87	0	63	15	24	28	31	1.96
56907--57080	57	3.0	57	78	5	206	48	16	4	31	1.65
56907--57080	29	6.0	29	83	6	192	48	16	4	31	1.65
63725--63817	43	2.2	43	98	0	177	20	20	13	45	1.85
67515--67577	32	2.0	32	84	6	83	33	11	1	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67611--67663	25	2.1	26	89	3	81	13	5	5	75	1.16
68581--68614	10	3.4	10	87	0	50	20	5	0	73	1.04
78865--79658	105	7.7	105	96	1	1279	33	25	18	22	1.96
81254--81283	16	1.9	15	93	6	51	30	0	0	70	0.88
81316--81348	18	1.9	18	88	11	52	30	0	3	66	1.06
81311--81349	20	1.9	20	85	15	53	30	2	2	64	1.21
82005--82067	32	2.0	32	84	6	83	33	11	1	53	1.46
99837--99877	21	2.0	21	85	0	55	34	14	26	24	1.94
110241--110328	44	2.0	44	97	0	167	26	20	2	51	1.59
113150--113203	27	2.0	27	100	0	108	40	7	0	51	1.30
113215--113265	25	2.0	26	88	3	77	25	23	9	41	1.85
115691--115724	14	2.4	14	90	0	50	35	0	0	64	0.94
115691--115724	17	2.0	17	88	0	50	35	0	0	64	0.94
115797--115845	25	2.0	25	100	0	98	36	22	16	24	1.94
123050--123091	4	11.2	4	80	14	54	52	21	0	26	1.47
123054--123089	18	2.1	17	94	5	63	52	22	0	25	1.47
123715--123833	36	3.4	36	79	7	113	31	21	12	35	1.90
123730--123833	36	3.0	36	81	4	124	32	20	11	35	1.88
124082--124246	58	2.8	58	81	8	176	29	11	16	41	1.84
124296--124359	30	2.1	30	94	0	110	35	9	14	40	1.78
124077--124364	29	9.8	28	69	16	149	29	11	15	42	1.83
124313--124496	66	2.9	64	77	10	205	30	14	13	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124655--124729	35	2.1	35	82	7	89	34	18	12	34	1.88
125001--125054	28	1.9	28	85	7	74	22	16	16	44	1.86
125168--125378	46	4.9	45	75	11	192	25	30	20	23	1.98
125066--125406	86	4.0	86	71	16	251	24	29	20	25	1.99
125066--125448	128	3.0	128	87	4	583	24	30	20	25	1.98
125085--125394	46	7.2	46	68	15	169	24	29	19	26	1.98
125085--125488	40	9.4	43	70	14	176	24	29	19	25	1.98
125646--125679	14	2.4	14	90	0	50	35	0	0	64	0.94
125646--125679	17	2.0	17	88	0	50	35	0	0	64	0.94
125752--125800	25	2.0	25	100	0	98	36	22	16	24	1.94
130940--130978	15	2.6	15	100	0	78	25	0	5	69	1.09
130954--130996	21	2.0	21	82	8	52	32	2	2	62	1.20
147642--147675	6	5.7	6	100	0	68	0	50	0	50	1.00
160525--160644	35	3.3	36	89	5	181	43	20	5	31	1.73
160576--160636	21	3.2	21	65	29	64	42	21	4	31	1.74
160527--160671	35	4.1	35	83	11	147	41	19	5	33	1.74
165177--165237	21	3.2	21	63	29	55	42	19	4	32	1.73
165127--165243	35	3.3	36	90	4	184	44	18	4	32	1.69
167155--167210	25	2.3	23	87	6	76	30	17	10	41	1.84
167155--167219	23	2.7	24	85	4	78	29	18	12	40	1.87
177488--177514	2	13.5	2	100	0	54	48	0	0	51	1.00
181767--181800	2	17.0	2	93	0	59	47	0	2	50	1.16

Tables:   1

The End!