Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006690.1 Hibiscus syriacus cultivar Beakdansim tig00016635_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82867

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
385--450
34
1.9
34
84
0
87
30
21
16
31
1.95
410--566
48
3.5
45
88
7
230
24
19
13
42
1.87
14455--14501
12
3.6
13
91
8
78
12
17
53
17
1.73
14896--14929
16
2.1
16
94
0
59
32
8
26
32
1.87
15680--15711
15
2.1
16
94
5
57
50
18
25
6
1.70
18973--19013
13
3.2
13
93
6
75
14
14
56
14
1.69
18973--19012
12
3.2
12
96
3
71
15
15
55
15
1.71
24876--24914
20
2.0
21
85
10
55
15
10
5
69
1.34
27559--27609
20
2.6
19
76
14
50
33
11
21
33
1.90
28603--28640
15
2.5
15
91
0
58
21
5
26
47
1.71
30449--30497
20
2.5
20
81
15
66
40
2
14
42
1.57
30549--30605
28
2.1
27
86
3
78
54
3
7
35
1.45
30554--30624
28
2.6
28
82
8
76
56
4
7
32
1.46
30760--30793
2
17.0
2
100
0
68
50
0
0
50
1.00
36897--36928
15
2.1
15
94
0
55
46
9
18
25
1.79
40230--40287
28
2.2
26
84
6
71
62
1
5
31
1.27
41114--41171
18
3.4
18
73
17
52
65
6
1
25
1.27
44324--44379
29
1.9
29
85
0
76
37
21
7
33
1.81
51315--51437
3
40.7
3
85
3
158
63
0
1
34
1.04
51334--51438
38
2.8
38
91
2
167
62
0
0
36
1.02
51334--51451
38
3.1
38
86
0
155
63
0
2
33
1.08
51678--52579
114
7.9
114
93
3
1462
28
20
13
36
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51678--52579
229
3.9
227
93
2
1495
28
20
13
36
1.91
51678--52579
115
7.9
115
93
2
1482
28
20
13
36
1.91
53186--53606
52
8.1
52
97
0
763
36
22
15
25
1.94
54751--54837
6
14.5
6
74
23
69
0
17
0
82
0.66
54756--54826
20
3.8
20
76
17
80
0
19
0
80
0.72
54750--54836
35
2.4
36
86
7
124
0
18
0
81
0.69
54756--54840
41
2.0
42
86
6
120
0
18
0
81
0.70
54751--54836
9
9.8
9
76
8
70
0
17
0
82
0.67
67621--67760
3
46.7
3
88
0
208
63
0
2
34
1.06
68035--68064
2
15.0
2
100
0
60
50
0
0
50
1.00
71733--71769
18
2.1
18
90
10
58
21
21
37
18
1.94
78837--78893
29
1.9
30
85
3
80
49
17
3
29
1.63
78896--78986
27
3.4
27
79
8
96
52
6
4
36
1.47
78909--78990
27
3.0
27
87
0
110
53
7
4
34
1.50
78970--79050
29
2.8
29
73
3
74
46
19
4
28
1.70
81464--81589
45
3.0
42
79
10
139
25
20
12
41
1.88

Tables:   1

The End!