Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006700.1 Hibiscus syriacus cultivar Beakdansim tig00016682_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  228063

Tables:   1   2   

This is table  2  of  2  ( 148 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
162110--162228
19
6.8
19
72
18
78
10
19
22
47
1.79
162135--162224
33
2.7
33
94
0
162
10
20
21
48
1.78
162387--162570
94
2.0
92
91
2
296
47
16
11
23
1.80
164403--164454
27
2.0
26
88
7
79
21
11
34
32
1.89
164635--164751
20
5.7
20
77
12
121
19
17
27
35
1.95
164637--164789
41
3.7
41
79
7
150
18
17
26
37
1.93
164637--164750
42
2.7
42
87
4
151
19
17
27
35
1.94
164737--164789
20
2.7
20
91
5
81
13
18
24
43
1.86
164821--164872
20
2.7
19
82
5
68
21
11
11
55
1.66
183684--183723
20
2.0
21
85
14
57
27
5
0
67
1.11
184999--185054
24
2.3
24
96
0
103
23
23
21
32
1.98
185087--185163
20
3.8
20
68
14
61
33
27
14
24
1.94
189506--189543
20
1.9
20
88
0
58
21
26
10
42
1.85
190170--190215
23
2.0
23
95
0
83
34
19
4
41
1.71
190674--190702
13
2.2
13
100
0
58
24
20
13
41
1.89
195372--195408
17
2.2
17
100
0
74
45
0
16
37
1.47
196319--196479
79
2.0
81
85
4
218
31
16
18
34
1.92
196542--196574
16
2.1
16
100
0
66
36
18
12
33
1.88
196798--196832
17
2.1
17
100
0
70
45
17
5
31
1.71
202386--202456
28
2.4
29
88
9
101
49
4
2
43
1.36
208800--208828
5
5.8
5
100
0
58
37
0
62
0
0.96
210266--210336
37
1.9
37
83
11
92
67
1
5
25
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
211606--211661
3
18.3
3
88
3
85
60
0
0
39
0.97
211606--211663
12
4.8
12
93
2
98
60
0
0
39
0.97
215907--215946
2
20.0
2
100
0
80
50
0
0
50
1.00
223160--223186
2
13.5
2
100
0
54
51
0
48
0
1.00
224307--224341
16
2.1
17
89
10
54
0
0
62
37
0.95
224307--224342
17
2.1
18
89
5
56
0
0
63
36
0.94

Tables:   1   2

The End!