genome.fa.s6700.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006700.1 Hibiscus syriacus cultivar Beakdansim tig00016682_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  228063

Tables:   1   2   

This is table  1  of  2  ( 148 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6582--6633	21	2.5	21	93	3	88	23	23	17	36	1.95
6691--6742	21	2.5	21	81	3	61	38	19	25	17	1.93
6731--6838	20	5.3	20	82	6	110	32	25	17	25	1.97
6793--6845	20	2.7	20	90	0	79	24	26	20	28	1.99
7362--7429	20	3.5	19	82	6	82	47	25	16	11	1.80
7425--7495	19	3.7	20	85	7	103	12	18	21	47	1.81
7478--7565	33	2.6	33	92	1	140	11	25	25	38	1.89
7533--7590	20	2.9	20	80	10	64	13	24	18	43	1.87
9642--9708	21	3.2	21	66	6	55	23	35	20	19	1.95
9586--9708	42	2.9	42	80	4	106	22	35	17	23	1.95
11068--11103	14	2.6	14	95	0	63	30	0	25	44	1.54
11267--11392	33	3.8	32	87	8	191	15	22	19	42	1.88
11267--11391	66	1.9	66	98	0	241	15	22	20	42	1.89
14992--15040	20	2.5	20	96	0	89	34	24	22	18	1.96
15068--15135	19	3.8	19	87	12	101	13	23	16	47	1.81
15233--15269	14	2.6	14	86	0	56	48	21	0	29	1.50
17149--17204	20	2.8	20	78	2	60	39	19	23	17	1.92
17193--17250	14	3.9	14	79	16	71	48	25	17	8	1.75
17177--17255	32	2.4	33	95	2	142	46	24	18	10	1.80
17778--17822	18	2.5	18	88	0	72	13	15	44	26	1.83
19143--19216	20	3.8	20	87	1	87	47	22	16	13	1.81
19450--19493	22	2.0	22	95	0	79	18	15	45	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19681--19733	20	2.7	20	93	0	88	24	16	28	30	1.97
19744--19836	20	4.6	20	78	4	96	17	24	18	39	1.91
19726--19836	41	2.7	41	94	4	188	17	22	18	42	1.89
21029--21074	24	1.9	24	81	0	56	56	4	2	36	1.31
21408--21441	14	2.4	14	95	0	59	41	20	23	14	1.89
22332--22382	21	2.5	21	81	6	61	47	7	1	43	1.43
30353--30380	14	2.0	14	100	0	56	28	42	7	21	1.79
31562--31614	21	2.5	21	81	6	72	20	26	18	33	1.96
31604--31655	21	2.5	21	87	3	70	38	17	23	21	1.93
31641--31776	41	3.3	42	79	6	138	35	24	16	23	1.95
31644--31758	20	5.7	20	78	6	106	33	25	17	24	1.96
31945--31988	22	2.0	22	90	0	70	22	40	15	20	1.90
32251--32309	20	3.0	20	87	0	73	15	18	22	44	1.87
32446--32500	25	2.2	24	78	15	58	20	9	18	52	1.71
33156--33194	14	2.8	14	84	0	51	33	2	17	46	1.62
33398--33453	20	2.8	20	81	10	69	16	19	21	42	1.89
34000--34052	20	2.7	20	81	0	70	28	18	22	30	1.98
34082--34133	20	2.5	21	87	3	70	21	23	17	38	1.93
34123--34175	21	2.5	22	75	6	65	33	16	26	22	1.96
46704--46743	20	2.0	20	85	0	53	20	2	2	75	1.04
47957--47987	13	2.4	13	100	0	62	25	22	6	45	1.76
51903--51953	25	2.0	24	81	7	57	35	9	9	45	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52344--52379	17	2.1	17	94	0	63	27	0	5	66	1.13
52320--52388	32	2.2	32	86	0	93	33	0	4	62	1.15
52351--52410	20	3.0	20	72	16	52	31	1	3	63	1.20
53414--53480	27	2.5	27	78	7	73	37	2	2	56	1.30
63557--63617	23	2.7	23	89	0	95	27	27	26	18	1.98
64225--64344	63	1.9	64	84	8	165	26	15	21	35	1.94
64206--64361	64	2.4	63	81	8	165	25	19	21	33	1.97
65333--65379	12	3.7	13	83	13	62	61	0	2	36	1.08
65519--65543	2	12.5	2	100	0	50	52	0	0	48	1.00
66863--67025	65	2.5	64	84	3	220	26	15	26	30	1.96
66973--67023	19	2.7	19	85	8	70	25	15	35	23	1.94
66867--67074	65	3.2	65	81	12	207	26	17	25	29	1.97
72395--72441	21	2.3	21	82	13	55	34	10	2	53	1.48
74375--74537	65	2.5	64	84	3	220	26	15	26	30	1.96
74485--74535	19	2.7	19	85	8	70	25	15	35	23	1.94
74379--74586	65	3.2	65	81	12	207	26	17	25	29	1.97
75438--75497	30	2.0	30	100	0	120	36	13	13	36	1.84
86395--86485	47	2.0	47	88	2	139	47	0	0	52	1.00
86498--86542	12	3.7	12	84	3	63	13	15	46	24	1.82
88692--88734	18	2.5	17	85	7	61	67	2	4	25	1.22
89126--89227	34	2.9	36	89	7	172	27	14	13	44	1.83
89775--90390	105	5.9	105	92	2	965	21	17	27	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91262--91420	67	2.4	67	89	4	241	34	11	22	31	1.90
91295--91921	36	18.4	36	64	20	213	36	12	20	29	1.90
91463--91921	37	13.4	37	64	22	189	37	12	20	29	1.90
91362--91819	102	4.5	102	94	0	801	36	12	20	29	1.90
91602--91970	168	2.2	166	91	2	587	37	12	20	30	1.89
91745--91885	66	2.1	66	96	0	255	36	10	21	31	1.88
91769--92015	102	2.4	104	85	6	340	36	12	20	30	1.90
93210--93559	183	1.9	183	94	0	619	30	20	21	28	1.98
97596--97620	2	12.5	2	100	0	50	48	0	0	52	1.00
105137--105170	16	2.1	16	88	0	50	50	0	2	47	1.16
105212--105245	16	2.0	18	88	11	54	26	2	5	64	1.30
105840--105873	16	2.1	16	88	0	50	50	0	2	47	1.16
105915--105948	16	2.0	18	88	11	54	26	2	5	64	1.30
104747--107566	705	4.0	707	98	0	5381	40	10	8	41	1.68
106547--106580	16	2.1	16	88	0	50	50	0	2	47	1.16
106622--106655	16	2.0	18	88	11	54	26	2	5	64	1.30
107252--107285	16	2.1	16	88	0	50	50	0	2	47	1.16
107327--107360	16	2.0	18	88	11	54	26	2	5	64	1.30
107826--108073	130	1.9	130	92	0	415	35	12	14	37	1.84
108470--108543	35	2.1	35	87	0	103	35	1	22	40	1.63
109037--109284	130	1.9	130	92	0	415	35	12	15	36	1.85
109681--109757	35	2.2	36	90	2	120	35	1	23	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117898--117963	34	1.9	34	93	0	114	18	34	25	21	1.96
118146--118185	20	1.9	21	85	10	55	37	37	10	15	1.80
118400--118469	34	2.1	32	89	5	104	31	15	31	21	1.95
121448--121513	34	1.9	34	93	0	114	18	34	25	21	1.96
121696--121735	20	1.9	21	85	10	55	37	37	10	15	1.80
121950--122019	34	2.1	32	89	5	104	31	15	31	21	1.95
127841--127878	18	2.1	18	100	0	76	55	5	10	28	1.56
140639--140704	27	2.4	27	82	0	96	24	28	18	28	1.98
143280--143352	28	2.5	29	82	6	94	38	10	9	41	1.73
143431--143482	27	1.9	27	88	0	77	32	11	11	44	1.77
143431--143534	31	3.6	29	81	7	95	36	12	10	40	1.78
143705--143770	31	2.1	31	82	0	78	24	12	10	53	1.69
144983--145028	22	2.1	22	84	4	58	69	4	6	19	1.28
146651--146778	37	3.4	37	79	10	125	45	3	3	46	1.40
154393--154559	49	3.5	50	78	12	163	49	2	8	38	1.50
154460--154632	7	25.3	7	68	23	59	52	1	9	36	1.42
154462--154665	27	7.8	26	72	19	124	52	0	8	37	1.39
154577--154648	22	3.3	22	73	21	71	59	0	5	34	1.21
154420--154668	43	5.6	45	75	17	152	51	1	8	38	1.41
155936--156289	20	17.5	20	73	14	190	38	22	17	21	1.93
155975--156289	41	7.7	41	80	6	295	38	22	17	21	1.93
156951--156984	12	2.8	12	90	0	50	55	29	0	14	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157105--157151	24	2.0	24	91	0	76	29	19	17	34	1.94
159634--159878	33	7.2	33	84	6	319	44	19	22	13	1.86
159682--159713	14	2.3	14	100	0	64	43	18	21	15	1.87
159667--159867	19	11.5	19	71	21	127	44	18	22	14	1.86
159759--159878	14	7.5	14	70	24	78	45	19	23	11	1.82
160015--160051	14	2.6	14	91	0	65	45	21	0	32	1.52
160018--160194	82	2.1	84	94	4	315	42	18	2	35	1.65
161525--161594	21	3.3	21	64	7	52	24	18	34	22	1.96
161522--161601	42	1.9	42	86	0	115	23	17	37	21	1.94
162101--162144	19	2.3	19	88	0	61	13	15	27	43	1.85

Tables:   1   2