genome.fa.s6705.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006705.1 Hibiscus syriacus cultivar Beakdansim tig00016701_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  196558

Tables:   1   2   

This is table  1  of  2  ( 212 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5880--5924	22	2.1	21	92	8	74	37	4	0	57	1.19
6364--6408	23	2.0	23	86	0	63	40	8	13	37	1.76
6439--6488	23	2.2	23	81	0	55	40	8	16	36	1.77
6351--6573	87	2.6	87	92	1	367	43	11	13	32	1.79
6526--6573	23	2.1	23	84	0	60	37	10	16	35	1.83
6591--7487	197	4.5	198	82	5	1046	31	15	13	39	1.86
6568--7487	397	2.3	395	88	2	1353	31	15	13	39	1.86
7731--7786	21	2.7	21	94	0	94	42	23	0	33	1.54
7839--8100	124	2.1	125	89	3	404	39	14	14	32	1.85
9013--9072	30	1.9	32	86	6	88	66	1	6	25	1.25
9036--9093	26	2.3	25	82	8	64	67	1	10	20	1.29
9114--9153	19	2.2	18	86	13	55	82	0	10	7	0.84
9066--9153	10	8.3	10	71	17	54	73	0	12	13	1.09
9112--9206	46	2.1	46	82	11	115	75	2	5	16	1.08
9180--9271	41	2.3	38	87	9	130	65	0	2	32	1.05
9279--9336	25	2.3	25	84	3	71	67	3	1	27	1.17
9282--9359	25	3.3	23	76	15	59	66	2	5	25	1.25
10461--10550	39	2.5	36	82	10	103	27	8	25	37	1.86
10536--10732	36	5.6	36	78	12	205	38	13	20	28	1.90
10536--10719	101	1.8	101	88	5	255	38	12	20	28	1.89
10808--10884	37	2.1	37	82	0	91	46	12	16	23	1.82
10770--11010	103	2.4	102	89	0	356	36	12	19	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10919--11097	87	2.1	87	91	0	286	35	12	19	32	1.90
10816--11202	189	2.0	190	83	4	487	37	12	19	29	1.89
11403--11678	107	2.6	106	86	4	385	20	19	24	35	1.96
13444--13505	9	6.8	9	74	9	54	1	16	3	79	0.95
13429--13492	27	2.3	27	83	2	74	4	17	1	76	1.03
13452--13505	17	2.9	19	78	10	67	1	14	3	79	0.95
16631--16708	9	8.9	9	78	16	51	78	1	5	15	0.99
16632--16722	9	10.4	9	74	15	50	76	1	5	16	1.02
16630--16761	43	3.0	43	78	15	112	74	0	4	20	1.04
16720--16841	2	63.5	2	74	16	71	59	1	1	37	1.17
16702--16775	37	2.0	37	89	5	114	66	0	2	31	1.06
17657--17714	2	29.0	2	100	0	116	50	0	0	50	1.00
17883--17914	2	16.0	2	100	0	64	50	0	0	50	1.00
24379--24411	12	2.8	12	90	0	57	24	24	15	36	1.93
24515--24627	38	3.0	38	85	2	129	23	25	23	26	2.00
25676--25747	9	8.0	9	77	0	72	47	15	9	27	1.77
25681--25751	18	3.9	18	81	7	90	45	15	9	29	1.78
26958--27022	30	2.2	30	88	5	96	36	15	6	41	1.72
28755--28995	51	4.7	51	75	7	209	39	8	24	27	1.85
33776--33823	21	2.3	21	100	0	96	31	10	25	33	1.89
36562--36601	22	1.9	20	85	10	53	22	7	2	67	1.28
36850--36894	19	2.3	20	85	11	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48548--48572	7	3.6	7	100	0	50	60	28	12	0	1.32
49192--49279	23	3.8	23	76	0	68	43	20	13	22	1.87
49242--49303	23	2.7	23	80	7	81	41	17	12	27	1.86
50332--50422	29	3.1	29	98	0	173	15	31	35	17	1.91
50482--50574	46	2.0	46	93	0	159	19	9	45	25	1.81
51120--51163	21	2.1	21	91	0	70	29	0	15	54	1.42
51114--51199	28	3.0	29	83	10	106	32	0	12	54	1.38
51162--51270	46	2.5	42	83	8	137	42	0	8	48	1.39
51704--51748	21	2.2	21	84	4	56	35	0	8	55	1.31
51918--51962	20	2.2	21	84	11	58	48	8	6	35	1.61
54951--55291	26	13.6	26	75	11	246	43	2	9	44	1.49
54893--55291	124	3.2	124	94	2	669	43	2	9	44	1.49
54988--55304	38	8.5	37	70	15	147	44	2	8	45	1.47
55199--55317	38	3.1	38	81	4	105	46	3	5	45	1.41
55994--56126	29	4.6	29	94	1	214	21	31	30	15	1.95
56145--56201	28	2.0	28	96	0	105	19	35	21	24	1.96
56204--56242	20	2.0	20	94	0	69	12	17	30	38	1.88
56230--56276	21	2.2	21	100	0	94	14	29	25	29	1.95
56204--56243	9	4.2	9	81	12	53	12	17	32	37	1.87
58911--58935	10	2.5	10	100	0	50	32	24	8	36	1.84
61189--61236	21	2.3	21	100	0	96	31	10	25	33	1.89
63985--64024	22	1.9	20	85	10	53	22	7	2	67	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68280--68324	21	2.2	21	84	4	56	35	0	8	55	1.31
68585--68643	26	2.3	25	75	18	66	47	8	3	40	1.51
71529--71869	26	13.6	26	74	11	255	43	2	9	44	1.50
71471--71869	124	3.2	124	93	3	662	43	2	9	44	1.50
71777--71895	38	3.1	38	81	4	105	46	3	5	45	1.41
72597--72679	17	5.5	17	61	26	51	21	28	31	18	1.97
72581--72714	29	4.6	29	92	1	207	21	30	31	16	1.95
72733--72789	28	2.0	28	96	0	105	19	35	21	24	1.96
72792--72830	20	2.0	20	94	0	69	12	17	30	38	1.88
72818--72864	21	2.2	21	100	0	94	14	29	25	29	1.95
72792--72831	9	4.2	9	81	12	53	12	17	32	37	1.87
79214--79278	23	2.8	23	80	0	76	20	24	23	32	1.98
84892--85315	44	9.6	44	85	1	501	20	25	22	32	1.98
95700--95792	21	4.5	21	81	4	109	39	17	24	18	1.91
95700--95792	41	2.3	41	98	0	177	39	17	24	18	1.91
95719--95853	41	3.3	41	84	4	139	38	20	20	20	1.94
95700--95828	20	6.3	20	69	11	66	41	17	20	20	1.91
96368--96448	19	4.5	19	73	16	73	46	24	17	11	1.80
96444--96608	19	9.1	19	77	15	152	12	23	21	43	1.86
96466--96559	33	2.8	33	91	0	143	10	22	25	41	1.86
96444--96601	52	3.0	51	77	11	167	12	22	22	42	1.86
98256--98280	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98455--98508	24	2.2	24	90	0	81	38	20	16	24	1.92
99567--99624	20	2.9	20	94	0	98	37	22	22	17	1.93
99648--99704	14	3.8	14	78	17	69	10	21	17	50	1.75
99643--99757	19	6.6	19	80	17	135	13	22	18	46	1.83
99643--99757	32	3.4	33	89	8	160	13	22	18	46	1.83
101744--101810	19	3.5	19	83	4	89	37	23	23	14	1.93
101799--101855	14	3.9	14	79	20	71	47	26	17	8	1.77
101783--101860	31	2.4	32	93	4	131	46	24	19	10	1.81
101867--101962	19	5.6	17	72	21	78	11	19	22	45	1.82
101889--101946	14	3.9	14	79	16	71	8	17	25	48	1.75
101872--101962	32	2.8	33	94	3	166	10	18	23	47	1.80
101947--102000	20	2.8	19	86	5	72	16	24	24	35	1.95
101935--102000	19	3.4	19	81	4	78	15	22	24	37	1.92
102469--102513	18	2.5	18	85	0	63	11	15	46	26	1.79
104132--104175	22	2.0	22	95	0	79	18	15	45	20	1.85
104365--104416	20	2.6	20	93	0	86	25	19	28	26	1.98
104345--104454	20	5.4	20	76	6	80	25	16	23	34	1.95
104386--104520	41	3.3	41	82	4	139	20	20	20	39	1.93
104447--104539	20	4.5	21	77	4	91	17	23	18	40	1.90
104466--104539	20	3.7	20	80	3	94	17	22	18	40	1.91
104447--104539	41	2.3	41	98	0	177	17	23	18	40	1.90
106176--106297	56	2.1	59	83	8	153	28	12	15	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107374--107429	24	2.3	24	96	0	103	41	8	3	46	1.52
108746--108849	52	2.0	52	87	9	151	37	17	11	33	1.86
111194--111227	2	17.0	2	100	0	68	50	0	50	0	1.00
114573--114608	18	2.0	18	100	0	72	38	16	5	38	1.72
117194--117239	18	2.6	18	92	0	74	17	23	41	17	1.90
124521--124550	8	3.9	8	95	4	53	40	0	0	60	0.97
124784--124815	16	2.0	16	93	0	55	46	25	15	12	1.81
124828--124888	11	5.4	11	73	21	54	22	21	22	32	1.98
124836--124879	12	3.8	12	81	6	63	20	20	22	36	1.95
124828--124888	23	2.7	23	97	0	113	22	21	22	32	1.98

Tables:   1   2