genome.fa.s6705.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006705.1 Hibiscus syriacus cultivar Beakdansim tig00016701_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  196558

Tables:   1   2   

This is table  2  of  2  ( 212 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127992--128078	34	2.5	34	85	7	104	47	26	1	25	1.59
128059--128138	21	3.7	22	77	11	85	47	30	0	22	1.52
128033--128107	28	2.6	28	93	2	123	49	25	0	25	1.51
128097--128137	14	2.9	14	85	0	55	48	34	0	17	1.47
128091--128136	21	2.2	21	100	0	92	50	32	0	17	1.47
128854--128894	14	3.1	14	76	20	52	41	0	4	53	1.22
131067--131259	29	6.6	28	73	12	122	40	19	5	34	1.74
131067--131258	58	3.3	58	79	7	210	40	19	5	34	1.74
136198--136238	21	2.0	21	85	9	57	31	24	21	21	1.98
137416--137732	103	3.1	103	97	0	580	27	12	23	36	1.91
137755--137812	23	2.5	23	91	0	89	22	27	25	24	2.00
137755--137822	23	3.0	23	88	0	82	23	23	25	27	2.00
141396--141509	29	4.0	28	77	15	117	37	20	5	36	1.75
141396--141508	56	2.0	56	87	3	165	38	19	5	37	1.75
141544--141591	19	2.5	19	93	0	78	20	33	29	16	1.95
142503--142541	20	2.0	20	85	5	53	46	0	12	41	1.42
150571--150604	3	11.3	3	100	0	68	32	0	0	67	0.91
152175--152228	20	2.7	19	75	8	63	33	31	18	16	1.93
152215--152347	20	6.5	20	71	14	83	36	23	19	21	1.95
152278--152533	20	12.6	20	77	6	176	37	25	18	18	1.93
152278--152509	61	3.8	61	84	4	285	36	25	18	19	1.94
152278--152535	101	2.6	101	85	7	328	37	25	18	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152339--152530	20	9.4	21	82	10	213	36	25	18	19	1.94
152278--152532	81	3.1	81	79	4	264	37	25	18	18	1.94
153089--153179	20	4.6	20	81	9	105	51	19	16	12	1.75
153089--153219	19	6.8	20	77	14	111	50	19	19	10	1.76
153104--153246	19	7.9	19	71	18	117	48	19	20	11	1.79
153104--153219	33	3.0	40	81	14	147	49	18	21	10	1.77
153171--153227	14	3.7	14	72	20	51	45	22	22	8	1.80
153152--153276	33	3.8	33	92	0	205	46	22	20	10	1.81
153272--153398	20	7.1	19	70	20	85	13	22	20	44	1.86
153277--153398	33	3.5	33	82	8	145	13	21	20	45	1.85
153334--153389	20	2.8	20	84	10	87	16	21	21	41	1.90
155082--155461	94	4.1	94	95	1	656	21	12	18	47	1.82
155578--155623	19	2.4	19	88	0	65	52	21	17	8	1.71
155627--155664	19	2.0	19	94	0	67	47	28	15	7	1.74
155708--155774	20	3.3	20	93	0	107	20	19	22	37	1.95
156257--156360	21	5.0	21	75	3	84	23	35	18	23	1.95
157718--157753	14	2.6	14	90	0	54	30	0	22	47	1.52
157866--157950	33	2.5	33	90	1	125	44	17	23	14	1.85
157959--158139	20	9.8	19	71	16	103	17	22	19	40	1.91
157959--158068	52	2.1	53	89	1	168	16	22	16	44	1.86
158053--158139	40	2.2	40	89	4	131	19	21	22	35	1.96
160035--160088	24	2.2	24	93	0	90	40	20	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160932--161505	20	28.5	20	78	9	357	21	18	24	35	1.96
161116--161161	21	2.2	21	88	0	65	36	17	28	17	1.92
161233--161444	41	5.2	41	90	1	329	18	17	25	38	1.93
161473--161566	42	2.3	42	76	9	95	21	21	22	35	1.96
161555--161608	20	2.7	19	75	8	63	16	18	31	33	1.93
163147--163189	23	1.9	22	90	4	68	44	2	0	53	1.13
163146--163194	23	2.3	20	80	16	62	44	2	0	53	1.12
169689--169763	27	2.8	26	94	4	125	45	0	5	49	1.25
169821--169876	27	2.0	27	86	10	76	44	0	7	48	1.30
169886--169923	7	5.9	7	85	14	55	42	0	57	0	0.98
169886--169923	12	3.1	12	88	11	51	42	0	57	0	0.98
170437--170475	19	2.1	19	100	0	78	5	30	25	38	1.78
170493--170527	18	1.9	18	100	0	70	25	17	28	28	1.97
171442--171671	8	30.5	8	75	18	181	40	2	6	50	1.40
171442--171717	42	6.8	38	81	15	290	40	2	6	49	1.43
171524--171671	47	3.3	45	87	6	205	40	1	6	52	1.35
171442--171679	123	1.9	122	92	5	397	41	2	6	50	1.39
171524--171671	31	5.0	28	77	11	102	40	1	6	52	1.35
171442--171717	123	2.3	120	88	8	391	40	2	6	49	1.43
173903--174246	172	2.0	169	89	2	528	37	17	4	40	1.70
174765--174818	22	2.5	22	87	0	90	16	35	18	29	1.93
175306--175398	44	2.1	46	85	4	127	31	32	18	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175457--175521	32	2.0	32	93	0	112	27	23	21	27	1.99
175447--175601	80	1.9	80	85	2	213	28	29	20	21	1.98
175537--175636	32	3.1	32	83	0	119	34	28	14	24	1.93
176972--177033	29	2.2	28	81	16	76	62	3	4	29	1.31
177782--177817	6	6.2	6	87	6	56	0	0	44	55	0.99
178178--178605	214	2.0	212	97	2	806	25	17	28	28	1.97
178597--178660	3	22.3	3	90	9	107	65	0	0	34	0.93
178588--178664	17	4.6	17	84	15	92	64	0	0	35	0.93
178597--178660	20	3.2	20	95	4	112	65	0	0	34	0.93
178897--179890	113	8.8	113	88	3	1299	27	20	14	37	1.92
178897--179858	454	2.1	451	89	3	1454	27	20	14	37	1.91
180298--180352	22	2.5	22	84	0	74	38	12	14	34	1.84
182875--183094	114	1.9	114	93	0	377	30	20	16	32	1.95
185336--185365	15	2.0	15	93	0	51	0	10	0	90	0.47
185344--185374	13	2.4	13	94	0	53	0	9	0	90	0.46
185342--185374	10	3.3	10	91	8	50	0	9	0	90	0.44
185667--185741	2	37.5	2	97	0	141	50	1	0	48	1.09
187357--187412	27	2.1	27	89	0	85	60	7	12	19	1.55
187386--187413	12	2.3	12	100	0	56	53	7	14	25	1.66
187472--187513	7	6.0	7	78	10	50	54	14	16	14	1.71
191223--191292	3	23.0	3	88	8	106	65	0	0	34	0.93
192928--193336	108	3.7	108	71	9	320	37	13	14	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192858--193279	226	1.9	225	89	0	664	38	13	14	33	1.86
193490--193940	198	2.3	197	86	5	604	34	13	13	38	1.84
194583--194617	15	2.3	15	90	0	52	28	14	22	34	1.93
195213--195575	195	1.9	194	82	5	464	31	15	13	39	1.86

Tables:   1   2

The End!