genome.fa.s671.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000671.1 Hibiscus syriacus cultivar Beakdansim tig00001305_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62838

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7409--7487	40	2.0	40	92	5	133	30	12	1	55	1.45
8598--8638	20	2.0	20	90	0	64	31	4	9	53	1.55
9756--9835	31	2.6	31	82	4	90	48	1	2	47	1.23
14331--14376	12	3.8	12	82	0	56	41	4	2	52	1.33
14413--14480	22	2.9	23	72	16	59	50	8	8	32	1.64
14420--14583	80	2.0	82	85	4	226	44	9	10	35	1.72
16744--16777	17	2.1	17	88	5	52	35	14	0	50	1.44
18481--18520	22	1.9	22	85	10	57	67	0	27	5	1.11
20951--20985	18	2.1	18	89	10	56	28	0	5	65	1.15
26202--26285	31	2.7	30	76	10	80	30	28	4	35	1.78
26428--26597	60	2.8	59	80	8	177	38	4	22	34	1.75
27099--27200	14	6.3	14	71	25	60	39	0	5	54	1.24
27051--27224	69	2.6	68	86	8	225	41	1	6	50	1.38
27138--27245	22	4.8	22	73	6	99	38	0	10	50	1.36
27111--27536	54	8.1	54	80	10	492	35	0	11	52	1.38
27099--27254	69	2.3	69	96	1	287	39	0	7	53	1.30
27226--27519	32	9.6	32	70	22	231	34	0	12	52	1.39
27248--27305	18	3.4	18	72	18	61	31	0	12	56	1.35
27289--27379	22	4.0	22	72	16	85	34	0	14	51	1.42
27180--27819	188	3.4	188	80	10	702	35	0	11	52	1.38
27395--27643	22	9.8	22	65	26	84	35	0	12	52	1.39
27133--27675	210	2.6	209	85	5	667	35	0	11	52	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27546--27707	32	4.7	32	79	16	189	35	0	10	53	1.35
27413--27594	18	10.9	17	63	26	61	34	0	12	53	1.39
27758--27804	22	2.4	19	80	19	60	34	0	12	53	1.39
27765--27809	22	2.0	22	100	0	90	37	0	13	48	1.42
27599--27819	54	4.0	54	72	15	218	35	0	11	53	1.37
27834--27892	31	1.9	31	85	0	82	42	8	5	44	1.57
39779--39817	20	1.9	20	85	15	53	58	5	5	30	1.41
39960--40017	24	2.4	24	76	0	62	60	13	3	22	1.49
40012--40066	24	2.3	23	75	9	58	47	5	14	32	1.67
41760--41814	23	2.3	24	75	6	58	54	7	0	38	1.28
44790--45290	253	2.0	246	87	6	715	29	11	18	40	1.87
45826--45953	59	2.2	59	100	0	256	32	10	12	43	1.77
52375--52430	17	3.3	17	69	18	53	32	12	8	46	1.73
52352--52430	34	2.3	34	97	0	149	35	12	7	44	1.71

Tables:   1

The End!