Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006745.1 Hibiscus syriacus cultivar Beakdansim tig00016939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73106

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3412--3534
31
4.0
31
82
2
140
24
18
17
39
1.91
4302--4342
21
2.0
21
95
0
73
24
21
29
24
1.99
5113--5157
21
2.1
21
87
0
63
31
28
24
15
1.96
5951--6075
31
4.0
31
91
2
189
20
19
23
36
1.95
10040--10164
31
4.0
31
92
2
198
20
20
23
36
1.95
14891--14941
19
2.6
20
87
3
68
45
5
13
35
1.68
18637--18672
15
2.5
14
86
8
54
0
19
0
80
0.71
18637--18684
21
2.3
22
86
13
66
0
16
2
81
0.79
29759--29799
14
2.8
15
77
7
57
43
7
17
31
1.76
29983--30047
20
3.0
21
73
13
62
43
0
0
56
0.99
30120--30171
23
2.3
23
83
3
70
40
0
0
59
0.97
30128--30178
23
2.2
23
82
0
57
45
0
0
54
0.99
30336--30392
25
2.3
24
78
3
60
52
0
3
43
1.18
30591--30724
41
3.2
41
87
3
187
50
17
14
17
1.79
30608--30738
41
3.3
38
84
8
106
48
15
16
19
1.81
31582--31634
27
2.0
27
85
7
72
28
16
20
33
1.95
31772--31883
59
1.9
59
85
7
156
37
17
11
33
1.86
39327--39433
49
2.1
51
86
10
150
28
23
16
30
1.96
39339--39446
51
2.2
49
85
6
137
28
24
17
29
1.97
43036--43088
25
2.1
25
82
6
63
71
5
0
22
1.06
43204--43234
15
2.1
15
93
0
53
12
32
19
35
1.90
43578--43615
18
2.1
18
95
0
67
21
18
31
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45119--45318
110
1.8
111
94
1
357
47
9
8
34
1.66
51170--51250
31
2.7
30
77
7
83
45
6
7
40
1.57
63159--63190
14
2.1
16
88
11
50
50
18
15
15
1.79
68347--68427
37
2.2
37
100
0
162
27
25
16
30
1.96

Tables:   1

The End!