Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000675.1 Hibiscus syriacus cultivar Beakdansim tig00001309_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124509

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6850--7673
273
3.0
276
98
1
1606
35
12
9
42
1.75
7861--7910
15
3.1
17
71
28
54
48
0
12
40
1.40
9051--9090
2
20.0
2
100
0
80
50
0
0
50
1.00
10457--10608
78
1.9
77
86
5
216
19
12
19
48
1.80
13958--14032
39
1.9
39
83
0
96
18
10
1
69
1.25
14678--14808
33
4.2
33
70
16
127
16
16
42
23
1.88
14710--15306
57
10.5
57
91
0
935
17
18
39
24
1.92
14710--15381
114
5.9
112
86
4
812
18
18
38
24
1.93
24365--24407
22
2.0
22
85
0
59
39
23
9
27
1.85
25889--25921
8
4.2
8
88
3
50
45
18
0
36
1.49
38968--39010
19
2.3
19
84
11
54
58
9
0
32
1.30
47286--47729
55
8.1
55
84
5
499
29
25
16
27
1.97
47322--47715
217
1.8
216
87
2
594
30
25
16
27
1.96
47303--47866
55
10.4
54
83
7
370
27
25
17
29
1.98
47303--47812
110
4.7
108
79
7
457
28
25
17
28
1.98
47686--47875
54
3.5
54
92
0
281
22
25
17
33
1.96
48279--48378
37
2.7
36
83
4
121
24
20
20
36
1.95
53015--53165
72
2.1
72
93
0
257
23
26
13
37
1.91
53826--53956
55
2.4
55
85
0
163
19
21
15
43
1.88
56124--56156
15
2.1
16
88
5
50
69
6
3
21
1.24
66537--66674
60
2.3
60
83
2
170
44
2
18
34
1.64
66569--66692
60
2.1
60
80
6
135
46
2
15
35
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78881--78985
36
2.9
36
75
13
101
31
5
12
50
1.63
82511--82537
3
9.0
3
100
0
54
0
33
0
66
0.92
86208--86275
32
2.2
31
89
7
102
47
2
5
44
1.42
94246--94327
2
41.0
2
100
0
164
50
0
0
50
1.00
95846--95910
3
21.0
3
84
6
85
32
1
3
63
1.19
97177--97345
76
2.2
75
86
4
223
28
11
9
49
1.71
107993--108070
39
2.0
40
92
2
131
53
1
8
35
1.40
124258--124312
28
2.0
28
82
7
67
38
0
9
52
1.33

Tables:   1

The End!