genome.fa.s6760.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006760.1 Hibiscus syriacus cultivar Beakdansim tig00017060_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  203478

Tables:   1   

This is table  1  of  1  ( 111 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9320--9815	249	2.0	251	92	4	831	39	16	15	28	1.89
10144--10204	27	2.3	27	100	0	122	39	16	13	31	1.87
13871--13938	27	2.6	27	95	4	122	41	16	11	30	1.84
22465--22536	24	3.0	24	83	2	92	51	18	11	19	1.75
22493--22533	12	3.5	11	83	9	55	48	19	17	14	1.81
22499--22537	12	3.3	12	78	7	53	46	20	17	15	1.84
24958--24997	20	2.0	20	90	0	62	25	27	32	15	1.95
27074--27130	24	2.4	24	84	0	78	50	17	12	19	1.77
30487--30511	2	12.5	2	100	0	50	48	0	0	52	1.00
31714--31823	24	4.6	24	75	8	109	48	17	13	20	1.81
31722--31806	12	7.3	11	70	17	55	49	17	12	20	1.79
31716--31806	47	1.9	48	86	6	132	49	17	13	19	1.79
34248--34282	7	4.7	7	92	3	52	25	28	31	14	1.95
36515--36541	5	5.4	5	100	0	54	22	0	0	77	0.76
37434--37480	2	23.5	2	100	0	94	48	0	0	51	1.00
39207--39533	37	8.9	36	78	12	278	45	3	6	45	1.43
39541--39576	14	2.5	14	90	4	54	25	2	0	72	0.98
40737--40815	36	2.2	36	100	0	158	25	10	0	64	1.24
42618--42649	15	2.1	15	100	0	64	43	15	12	28	1.83
43687--43790	42	2.5	42	85	3	138	22	25	18	34	1.96
43949--44031	42	2.0	42	90	4	132	28	22	14	33	1.94
43962--44096	42	3.3	41	79	10	132	29	25	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43592--44262	247	2.7	245	83	4	814	29	21	16	32	1.95
48831--48898	34	2.0	34	97	0	127	41	14	22	22	1.90
54136--54234	27	3.7	27	98	0	189	36	10	27	26	1.88
63815--63870	20	2.8	20	91	2	85	23	30	10	35	1.89
63796--63919	66	1.9	66	87	0	185	23	25	11	39	1.88
63841--64069	46	5.0	46	91	1	361	21	23	11	43	1.85
63838--64037	20	8.7	24	70	21	135	21	23	12	43	1.86
70888--71321	46	9.4	46	88	1	609	23	21	11	43	1.85
71045--71262	20	9.7	20	67	21	103	22	22	11	43	1.85
76106--76132	2	13.5	2	100	0	54	51	0	0	48	1.00
81694--81947	36	6.9	35	77	10	217	45	3	6	44	1.47
81933--81997	31	2.1	31	91	0	103	46	3	6	44	1.44
82078--82137	3	20.7	3	77	16	56	26	3	1	68	1.15
82075--82141	25	2.8	24	86	11	84	25	2	1	70	1.10
82321--82350	16	1.9	15	93	6	51	20	40	26	13	1.89
86653--87432	85	9.4	83	83	4	857	29	24	21	25	1.99
86653--87432	164	4.7	165	86	2	985	29	24	21	25	1.99
88045--88298	36	6.9	36	76	9	237	45	3	6	44	1.47
88284--88348	31	2.1	31	94	0	112	47	3	6	43	1.43
88284--88369	31	2.7	31	87	1	109	44	2	5	47	1.39
88428--88487	3	20.7	3	77	16	56	26	3	1	68	1.15
88425--88491	25	2.8	24	86	11	84	25	2	1	70	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88671--88700	16	1.9	15	93	6	51	20	40	26	13	1.89
94249--94279	2	15.5	2	100	0	62	48	0	0	51	1.00
94508--94555	20	2.4	20	77	19	55	75	0	14	10	1.06
98012--98050	15	2.6	14	84	11	51	0	17	5	76	0.96
98012--98050	7	5.3	7	82	11	51	0	17	5	76	0.96
108523--108559	15	2.3	17	81	13	51	59	0	0	40	0.97
108565--108613	15	3.1	16	79	8	64	67	4	2	26	1.19
116271--116314	19	2.3	19	100	0	88	59	20	6	13	1.57
119437--119520	42	2.0	42	88	0	123	21	15	14	48	1.80
119758--119804	22	2.1	22	92	4	76	46	2	0	51	1.13
119884--119969	27	3.1	27	71	18	70	47	1	2	48	1.22
120122--120198	27	3.0	26	72	18	72	50	0	1	48	1.09
120367--120425	14	4.1	14	80	4	73	35	18	6	38	1.78
120365--120423	29	2.0	29	93	0	100	32	18	8	40	1.81
120461--120512	15	3.5	15	78	5	70	40	5	19	34	1.75
120921--121032	29	3.8	30	75	18	94	51	1	0	46	1.11
121047--121096	16	3.3	14	78	15	55	56	2	0	42	1.11
121044--121120	30	2.6	29	84	12	93	51	1	0	46	1.09
121044--121087	8	5.6	8	81	13	56	52	2	0	45	1.13
121758--121868	35	3.2	34	83	2	132	41	22	0	35	1.60
121766--121867	34	2.9	34	83	2	114	43	22	0	33	1.60
126970--127013	18	2.4	18	96	0	79	27	20	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127842--127899	19	2.8	20	79	10	73	24	32	25	17	1.96
131314--131381	35	1.9	35	82	5	84	32	0	23	44	1.54
133047--133076	6	5.0	6	100	0	60	16	0	16	66	1.25
133727--133807	40	2.0	40	92	0	135	41	22	13	22	1.88
134385--134499	3	38.7	3	87	5	171	34	0	0	64	1.00
135870--135938	28	2.6	28	84	11	83	28	1	4	65	1.21
135870--135957	28	3.4	26	77	19	78	29	1	4	64	1.20
135939--135983	23	2.0	22	86	4	63	31	0	2	66	1.04
136715--136765	20	2.5	21	75	12	54	27	7	0	64	1.21
142682--143087	83	4.8	83	91	3	598	27	13	21	37	1.91
142680--143087	165	2.4	168	90	4	624	28	13	21	37	1.91
142682--143138	83	5.3	90	85	9	571	28	13	20	36	1.91
144341--144512	74	2.3	75	84	4	213	33	15	20	29	1.94
145849--145903	22	2.5	22	93	0	101	34	10	14	40	1.81
146600--146859	88	3.0	88	97	0	493	25	18	20	35	1.95
146808--146966	45	3.5	45	89	5	239	22	22	22	33	1.97
146898--147939	76	13.7	76	95	0	1784	23	21	20	35	1.96
148078--148195	3	39.7	3	84	5	159	34	0	1	63	1.05
149562--149630	28	2.6	28	84	11	83	28	1	4	65	1.21
149562--149649	28	3.4	26	77	19	78	29	1	4	64	1.20
149631--149677	23	2.0	24	87	4	69	31	0	2	65	1.04
152894--152924	4	7.5	4	92	7	53	0	25	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168887--168924	17	2.2	17	95	0	67	42	13	7	36	1.73
168929--168992	29	2.2	29	80	0	74	34	20	21	23	1.97
176992--177039	3	16.0	3	82	8	62	62	2	0	35	1.07
176994--177047	12	4.5	13	78	17	64	64	1	0	33	1.04
177288--177383	40	2.4	40	87	1	140	18	23	9	47	1.78
177439--177582	43	3.4	43	95	2	249	18	23	11	47	1.80
177288--177695	199	2.1	192	94	3	708	25	22	11	40	1.88
177523--178034	224	2.3	224	95	0	916	27	21	14	36	1.93
177523--178044	113	4.6	113	92	1	863	27	21	14	36	1.93
178770--178989	114	1.9	114	87	0	323	30	19	14	35	1.92
187002--187030	15	1.9	15	100	0	58	41	6	24	27	1.80
190288--190327	15	2.9	14	89	10	64	72	2	5	20	1.15
191164--191245	27	3.0	26	75	7	74	65	3	1	29	1.17
192565--192630	3	22.0	3	93	6	116	65	0	0	34	0.93
192566--192638	9	7.5	10	85	11	91	67	0	0	32	0.91
193193--193308	59	2.0	59	83	6	146	36	17	14	31	1.90
197625--197720	3	33.0	3	84	4	117	64	0	3	32	1.09
197633--197735	12	8.9	11	79	12	57	65	0	4	30	1.14
197968--198731	111	6.8	113	88	5	1130	28	19	13	37	1.90
197966--198731	224	3.4	227	90	5	1242	28	19	13	37	1.90
200533--200578	13	3.6	12	86	13	65	0	10	0	89	0.50
200502--200578	27	2.8	28	86	5	102	2	15	0	81	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200513--200581	14	4.9	14	84	12	81	2	14	0	82	0.78

Tables:   1

The End!