Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006816.1 Hibiscus syriacus cultivar Beakdansim tig00017324_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125807

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
666--1768
84
13.4
83
78
6
955
24
19
24
31
1.98
700--1768
246
4.3
247
84
4
1207
24
19
24
31
1.98
2862--3088
95
2.6
87
73
16
205
33
19
18
27
1.96
2918--3093
95
1.9
95
86
2
255
32
20
17
28
1.96
7077--7363
5
58.2
5
91
6
480
58
0
0
40
1.03
10426--10484
22
2.7
21
79
7
64
71
3
1
23
1.11
11580--11634
3
18.0
3
92
3
92
65
0
1
32
1.03
11740--12061
65
4.7
66
74
18
236
44
7
2
45
1.46
11763--12093
101
3.2
103
75
16
301
44
7
3
44
1.50
11636--12088
171
2.6
174
79
12
451
44
7
3
44
1.50
11972--12032
27
2.3
27
80
5
81
47
4
3
44
1.41
11641--12093
38
12.8
35
75
17
307
44
7
3
44
1.50
16378--16789
207
2.0
206
99
0
806
32
13
16
37
1.87
18805--18848
22
2.0
22
100
0
88
0
22
22
54
1.45
33996--34482
229
2.1
228
96
0
884
44
8
7
39
1.63
34760--34806
20
2.4
19
89
10
76
55
10
17
17
1.69
34549--35019
180
2.6
180
89
1
683
42
14
16
26
1.86
34940--34986
20
2.4
19
79
10
58
53
8
17
21
1.70
37222--37286
21
3.1
21
79
0
76
38
13
30
16
1.88
37320--37385
33
2.0
33
90
0
105
28
0
48
22
1.51
39174--39222
19
2.6
19
93
0
80
30
2
10
57
1.43
39331--40882
198
7.8
199
96
1
2814
36
15
16
31
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42347--42426
6
13.3
6
75
0
52
37
7
33
21
1.81
42386--42430
3
15.0
3
85
0
63
37
2
33
26
1.69
42358--42426
12
5.8
12
84
0
66
36
7
34
21
1.81
47015--47498
183
2.7
182
94
1
846
34
14
16
33
1.90
49966--50030
25
2.6
25
80
0
85
35
9
13
41
1.77
50375--50447
23
3.2
23
88
0
101
34
4
21
39
1.73
50870--50906
18
2.1
18
94
0
65
29
5
13
51
1.63
51165--51251
39
2.2
39
91
0
147
48
19
13
18
1.81
51673--51745
23
3.2
23
88
0
101
35
2
20
41
1.67
51891--51956
29
2.2
29
82
12
73
51
4
0
43
1.22
58795--58827
14
2.3
15
89
5
50
69
0
0
30
0.88
64123--64209
2
43.5
2
100
0
174
50
0
0
49
1.00
68565--68653
42
2.1
42
97
0
169
41
2
5
50
1.38
68580--68652
15
5.1
15
68
15
55
42
1
4
52
1.29
86393--86424
16
2.0
16
100
0
64
6
25
31
37
1.81
95270--95295
2
13.0
2
100
0
52
50
0
0
50
1.00
103297--103327
15
2.1
15
93
0
53
19
6
3
70
1.22
104568--104627
2
30.0
2
100
0
120
50
0
0
50
1.00
105089--105138
24
2.1
24
88
0
73
10
26
6
58
1.54
113520--113544
13
1.9
13
100
0
50
48
0
4
48
1.20
115373--115425
26
2.0
26
85
7
70
52
0
1
45
1.11
120877--120910
18
1.9
17
88
5
50
29
0
5
64
1.17

Tables:   1

The End!