genome.fa.s6831.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006831.1 Hibiscus syriacus cultivar Beakdansim tig00017367_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  178850

Tables:   1   2   

This is table  1  of  2  ( 186 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
843--905	16	3.9	16	78	0	72	20	15	15	47	1.82
2056--2103	24	2.0	24	83	0	60	60	2	0	37	1.09
5239--5584	131	2.6	133	85	9	433	23	20	20	35	1.96
5629--5670	22	1.9	22	95	0	75	47	0	16	35	1.47
5628--5748	63	2.0	63	88	3	183	40	1	23	34	1.64
5697--5748	23	2.2	23	82	3	59	42	0	26	30	1.56
5930--6001	33	2.1	34	89	2	110	36	6	6	50	1.57
6506--6578	21	3.5	21	83	7	94	26	19	34	20	1.96
6556--6638	42	2.0	42	80	0	94	25	18	32	24	1.97
10003--10377	184	2.0	182	89	3	574	46	6	2	43	1.44
11151--11264	39	2.8	40	82	7	151	38	10	0	50	1.43
11618--11660	22	2.0	21	90	4	68	65	0	4	30	1.13
17617--17641	12	2.1	12	100	0	50	40	8	36	16	1.77
17670--17754	29	2.9	28	93	6	143	11	36	30	21	1.89
17772--17831	23	2.6	23	86	5	77	10	36	26	26	1.88
17819--17865	10	4.7	10	87	10	69	12	25	38	23	1.90
17905--17962	29	2.0	29	82	0	71	24	25	34	15	1.95
18774--18807	2	18.0	2	88	11	54	47	0	0	52	1.00
18835--19227	38	10.2	39	87	4	433	44	2	5	47	1.41
18962--18986	13	1.9	13	100	0	50	48	0	8	44	1.32
18862--19227	76	4.7	76	88	2	480	43	2	6	48	1.39
18835--19209	114	3.3	115	87	2	486	44	2	6	47	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19241--19280	18	2.2	19	95	4	73	17	7	0	75	1.03
20315--20379	16	4.1	16	85	0	85	56	16	12	13	1.66
20307--20379	32	2.3	32	83	4	87	58	15	10	15	1.62
20616--20673	23	2.5	23	91	0	98	25	17	22	34	1.96
21900--21958	21	2.8	21	92	5	93	22	0	35	42	1.54
21974--22025	14	3.7	14	80	10	61	25	0	28	46	1.53
21953--22025	7	10.4	7	72	16	53	24	0	27	47	1.52
22044--22075	7	4.6	7	96	0	55	21	0	18	59	1.38
22227--22258	14	2.3	14	100	0	64	50	28	15	6	1.68
22206--22257	24	2.2	24	89	0	77	55	25	11	7	1.61
22288--22329	21	2.0	21	90	9	68	11	16	14	57	1.66
22640--22680	11	3.5	12	81	15	50	14	9	0	75	1.04
23420--23487	2	34.0	2	100	0	136	50	0	0	50	1.00
23490--23531	20	2.1	20	90	0	66	61	4	0	33	1.17
23410--23591	10	19.9	9	76	16	51	57	1	1	40	1.13
23508--23590	17	4.9	17	68	22	59	61	0	1	37	1.04
23510--23589	26	3.1	26	80	16	103	62	0	1	36	1.03
23504--23610	26	4.4	23	76	21	60	60	0	0	37	1.09
23521--23610	23	3.7	22	75	20	65	58	1	1	38	1.12
27671--27753	29	2.8	29	92	1	139	43	9	14	32	1.78
32441--32523	29	2.8	29	92	1	139	43	9	14	32	1.78
34377--34401	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35421--35446	13	2.0	13	100	0	52	61	0	7	30	1.24
38960--39136	88	2.0	89	92	3	295	42	12	16	28	1.85
45009--45040	16	2.0	16	100	0	64	43	18	12	25	1.85
45153--45207	15	3.5	15	73	9	56	43	9	12	34	1.74
45155--45205	17	3.1	17	72	11	52	43	9	9	37	1.71
45253--45339	33	2.6	33	90	0	129	48	14	3	33	1.61
45347--45387	21	2.0	21	95	0	73	48	2	14	34	1.57
47211--47248	15	2.5	15	95	0	67	26	15	26	31	1.96
47668--47707	12	3.1	12	80	19	53	20	17	15	47	1.83
47667--47706	15	2.9	14	85	14	57	20	17	15	47	1.83
48308--48359	14	3.4	14	72	23	50	9	25	25	40	1.85
48300--48384	33	2.5	33	96	1	152	11	23	23	41	1.87
48366--48412	20	2.3	21	85	10	71	10	25	14	48	1.76
50099--50403	94	3.3	94	93	2	494	21	12	18	47	1.81
50848--50914	21	3.2	21	66	6	55	25	35	19	19	1.95
51565--51600	14	2.6	14	95	0	63	33	0	22	44	1.53
51707--51768	19	3.3	19	90	0	88	41	24	17	16	1.89
51764--51914	19	8.7	19	66	21	98	12	23	19	44	1.85
51768--51894	33	3.8	33	93	0	218	12	23	18	45	1.83
51789--51876	14	5.6	14	70	23	50	12	23	18	45	1.83
51867--51960	20	4.7	20	72	13	68	21	20	23	35	1.96
54225--54249	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54424--54477	24	2.2	24	90	0	81	40	20	16	22	1.91
55217--55370	20	7.7	20	86	4	184	24	19	26	29	1.98
55317--55413	21	4.7	21	72	12	83	19	18	21	40	1.92
55217--55433	20	10.7	20	80	8	179	23	19	24	32	1.97
55197--55392	40	4.8	41	78	3	137	23	19	24	32	1.98
55319--55456	62	2.2	62	97	0	258	20	19	21	39	1.93
55422--55473	20	2.5	20	87	3	68	21	23	17	38	1.93
55360--55473	21	5.5	21	75	7	74	21	21	18	38	1.93
55463--55515	21	2.5	22	81	6	74	33	18	26	20	1.96
63375--63448	29	2.5	29	82	8	87	43	9	17	29	1.81
65255--65281	4	6.8	4	100	0	54	25	0	0	74	0.83
66723--66824	31	3.3	32	89	5	147	31	6	16	45	1.74
73019--73056	20	1.9	20	94	0	67	39	7	21	31	1.82
73818--73854	15	2.5	15	91	4	58	32	10	10	45	1.74
74082--74151	19	3.7	19	96	0	122	30	27	21	21	1.98
75688--75727	21	1.9	22	90	10	66	12	10	40	37	1.77
75832--75915	21	4.0	21	84	6	109	25	28	25	21	1.99
75832--75915	41	2.0	42	84	6	109	25	28	25	21	1.99
75979--76003	13	1.9	13	100	0	50	24	20	40	16	1.91
75937--76034	21	4.7	21	77	13	103	22	20	35	21	1.96
75935--76034	42	2.4	41	81	9	114	23	20	36	21	1.96
76114--76171	30	2.0	29	90	10	91	44	17	5	32	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76114--76173	29	2.0	30	93	6	104	43	16	6	33	1.74
79418--79485	20	3.3	20	77	4	64	30	25	23	20	1.98
79520--79562	22	1.9	23	90	4	70	20	20	32	25	1.97
79510--79604	21	4.6	19	77	16	91	23	18	33	24	1.97
79685--79744	29	2.0	30	90	6	95	45	15	6	33	1.72
79685--79744	31	2.0	29	90	6	93	45	15	6	33	1.72
81113--81163	11	4.6	11	71	9	50	60	1	3	33	1.26
81105--81182	33	2.5	29	82	15	102	53	2	7	35	1.43
81113--81178	33	2.0	33	91	5	107	56	3	6	34	1.40
81942--81994	22	2.5	20	82	11	61	39	0	1	58	1.09
81942--82000	23	2.7	22	87	7	77	40	0	1	57	1.09
86179--86233	21	2.6	21	94	0	92	18	20	29	32	1.96
86509--86569	22	2.7	23	82	10	81	29	8	8	54	1.59
86585--86628	22	2.0	22	86	8	63	15	9	18	56	1.65
86842--86892	24	2.1	24	85	7	68	43	13	13	29	1.83
90412--90482	36	2.0	36	89	10	110	19	21	25	33	1.97
97788--97821	16	2.1	16	89	10	52	82	2	14	0	0.79
99100--99158	29	2.0	30	83	3	75	54	3	3	38	1.34
104844--104870	13	2.1	13	100	0	54	22	33	14	29	1.94
108009--108261	20	12.6	20	84	2	274	38	24	17	18	1.92
108009--108260	40	6.3	40	88	3	310	38	25	17	19	1.93
110748--110931	33	5.2	34	75	16	144	46	17	21	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110734--110837	33	3.1	33	86	8	147	46	19	21	13	1.84
110748--110969	19	12.7	19	76	18	241	45	18	21	14	1.85
110776--110963	52	3.6	52	90	5	265	46	17	22	14	1.83
110815--110969	71	2.2	71	97	0	292	45	17	21	15	1.85
110834--110963	33	3.8	33	87	9	197	46	17	21	14	1.84
110748--110969	52	4.2	52	86	6	229	45	18	21	14	1.85
110978--111056	19	4.4	19	80	16	105	13	22	17	45	1.84
111163--111199	14	2.6	14	91	0	65	45	21	0	32	1.52
113177--113233	14	3.7	14	77	20	60	45	22	21	10	1.82
113158--113250	33	2.8	33	95	0	168	47	21	20	10	1.80

Tables:   1   2