genome.fa.s6831.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006831.1 Hibiscus syriacus cultivar Beakdansim tig00017367_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  178850

Tables:   1   2   

This is table  2  of  2  ( 186 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113121--113255	19	7.6	19	76	16	128	45	23	19	11	1.82
113251--113379	19	7.3	19	75	17	125	8	17	28	45	1.77
113251--113342	33	2.8	33	93	3	150	7	18	28	45	1.76
113427--113988	93	6.1	93	99	0	1099	46	19	12	22	1.83
115695--115784	14	5.7	14	72	23	63	43	23	23	10	1.83
115687--115801	33	3.5	33	95	0	212	46	20	22	10	1.81
115709--115813	19	6.1	19	73	20	104	45	20	21	11	1.83
115995--116049	22	2.5	22	81	0	74	20	16	40	23	1.91
116196--116349	20	7.7	20	81	7	168	18	18	26	37	1.93
116195--116349	40	3.8	40	82	4	186	18	18	26	37	1.93
116336--116418	21	4.0	21	73	6	78	25	16	24	33	1.96
116316--116414	42	2.4	43	77	11	100	21	18	23	37	1.94
116465--116630	79	2.1	79	100	0	332	28	11	19	40	1.86
121563--121626	30	2.1	30	88	2	92	31	6	7	54	1.54
121794--121864	25	2.7	27	76	14	76	50	1	5	42	1.34
123814--123867	21	2.6	21	93	0	90	25	16	25	31	1.97
123858--123956	22	4.8	20	68	19	78	16	20	24	39	1.92
123879--123950	22	3.4	22	73	11	87	18	18	26	37	1.93
123858--124044	41	4.7	41	77	15	214	19	20	22	37	1.94
123859--124063	19	10.4	20	67	17	92	19	20	21	38	1.94
124647--124720	6	12.5	6	98	1	141	0	16	51	32	1.45
124821--124871	19	2.5	22	75	18	72	35	27	17	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124857--124979	41	3.0	42	83	10	150	36	24	20	18	1.95
124806--124930	60	2.1	59	80	8	137	38	24	19	18	1.93
124902--124974	19	3.7	19	73	8	74	38	26	20	15	1.92
125117--125157	22	1.9	21	90	5	64	26	0	2	70	0.99
126543--126587	20	2.2	20	92	0	72	13	8	40	37	1.76
126811--126874	22	2.9	22	90	0	92	26	17	25	31	1.97
131449--131502	2	27.0	2	96	0	99	50	1	0	48	1.11
134480--134536	22	2.6	22	100	0	114	54	7	5	33	1.50
134562--134590	14	2.1	14	100	0	58	41	20	0	37	1.53
137045--137087	20	2.2	19	87	4	59	53	2	37	6	1.41
140904--140942	21	1.9	20	89	5	60	56	10	0	33	1.33
141052--141120	33	2.1	33	91	0	111	13	44	10	31	1.76
145310--145378	20	3.4	20	80	4	84	30	27	14	27	1.95
145312--145672	111	3.3	111	91	0	569	31	24	15	28	1.96
145545--145610	20	3.3	19	68	14	51	31	24	13	30	1.94
145595--145716	50	2.4	50	88	0	172	32	22	17	27	1.96
145842--145907	20	3.2	21	84	2	82	30	13	27	28	1.94
148608--148680	24	3.0	24	95	2	128	36	16	17	28	1.92
149233--149290	24	2.4	24	88	5	82	58	17	8	15	1.61
149253--149308	14	4.3	14	69	17	57	57	16	12	14	1.66
151043--151078	13	2.8	13	88	12	56	33	16	36	13	1.89
151097--151123	13	2.1	13	100	0	54	29	14	40	14	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151045--151134	45	2.0	46	95	2	164	32	20	31	16	1.95
151155--151234	29	2.8	29	88	3	90	15	33	31	20	1.93
151303--151358	27	2.1	27	96	0	103	26	25	23	25	2.00
151475--151520	23	2.0	23	100	0	92	47	4	39	8	1.54
151475--151535	23	2.6	23	86	5	59	50	6	36	6	1.54
151525--151577	21	2.5	21	96	0	97	62	0	35	1	1.06
151523--151554	17	1.9	16	93	6	55	62	0	37	0	0.95
151712--151800	41	2.2	41	78	8	92	42	1	10	46	1.45
151781--151872	46	2.0	47	85	10	127	40	0	11	47	1.40
152032--152078	16	3.0	16	84	9	53	29	0	10	59	1.31
152053--152083	15	2.1	14	94	5	53	38	0	6	54	1.26
153082--153122	20	2.0	21	85	4	57	63	0	2	34	1.08
154162--154498	26	13.4	25	79	14	288	43	10	2	43	1.52
154162--154556	124	3.2	124	99	0	781	43	10	2	43	1.52
157386--157444	26	2.3	24	78	16	64	40	3	8	47	1.51
157710--157740	15	2.1	15	93	0	53	48	9	0	41	1.36
158149--158211	28	2.2	30	91	5	103	57	11	0	31	1.34
158153--158218	28	2.4	28	85	10	98	56	10	0	33	1.34
158188--158236	21	2.3	21	85	3	71	53	16	0	30	1.43
158814--158876	29	2.2	29	94	0	108	23	31	28	15	1.96
169807--169837	14	2.2	14	94	0	53	32	22	22	22	1.98
170892--170920	12	2.4	12	100	0	58	58	0	0	41	0.98

Tables:   1   2

The End!