genome.fa.s6856.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006856.1 Hibiscus syriacus cultivar Beakdansim tig00017446_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1184065

Tables:   1   2   3   4   

This is table  4  of  4  ( 400 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1082599--1082639	22	1.9	21	90	5	64	26	2	36	34	1.70
1087824--1087884	11	6.2	9	78	17	52	3	13	4	78	1.03
1087840--1087866	11	2.5	11	100	0	54	7	7	7	77	1.12
1088199--1088239	22	1.9	21	90	5	64	26	2	36	34	1.70
1090093--1090134	19	2.2	19	95	0	75	11	21	28	38	1.89
1098834--1098937	23	4.4	23	69	23	65	28	36	4	29	1.78
1098832--1099008	36	4.9	36	91	0	282	28	37	5	29	1.78
1098834--1098975	11	12.0	11	67	23	58	28	35	5	30	1.80
1103415--1103523	36	3.0	36	94	0	191	27	35	5	31	1.80
1103417--1103502	11	7.2	11	70	23	50	30	36	4	29	1.78
1104842--1104927	11	7.2	11	70	23	50	30	36	4	29	1.78
1104840--1104940	36	2.8	36	95	0	184	27	36	4	30	1.78
1106267--1106352	11	7.2	11	70	23	50	30	36	4	29	1.78
1106265--1106365	36	2.8	36	95	0	184	27	36	4	30	1.78
1107688--1107791	33	3.1	33	82	9	95	30	36	1	30	1.69
1113365--1113468	33	3.1	33	82	9	95	30	36	1	30	1.69
1123820--1123861	21	2.0	21	100	0	84	28	23	14	33	1.94
1124478--1124563	11	7.3	11	72	22	68	33	36	2	27	1.70
1124479--1124580	36	2.9	36	92	1	161	33	36	2	27	1.72
1134605--1134646	21	2.0	21	100	0	84	28	23	14	33	1.94
1135288--1135351	13	5.4	11	73	23	58	32	35	3	28	1.73
1135265--1135368	36	2.9	36	94	1	174	31	36	3	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1138474--1138501	12	2.3	12	100	0	56	35	10	14	39	1.81
1141364--1141405	21	2.0	21	100	0	84	28	23	14	33	1.94
1142047--1142110	13	5.4	11	73	23	58	32	35	3	28	1.73
1142024--1142127	36	2.9	36	94	1	174	31	36	3	27	1.75
1147185--1147228	6	7.2	6	82	12	54	2	18	0	79	0.83
1147439--1147481	15	2.9	15	85	0	59	53	0	23	23	1.46
1155281--1155349	33	2.1	33	83	5	86	31	1	36	30	1.67
1157282--1157314	16	2.1	16	94	0	57	39	6	21	33	1.78
1162532--1162561	13	2.4	13	94	5	53	43	0	30	26	1.55
1165317--1165371	23	2.3	23	80	17	60	41	5	12	40	1.66
1172389--1172450	13	4.9	13	72	18	51	32	37	1	29	1.67
1172391--1172470	35	2.2	37	91	4	128	33	37	1	27	1.65
1172391--1172470	11	6.7	11	74	23	65	33	37	1	27	1.65
1172391--1172470	24	3.4	22	76	22	65	33	37	1	27	1.65
1175487--1175548	13	4.9	13	72	18	51	32	37	1	29	1.67
1175489--1175568	35	2.2	37	91	4	128	33	37	1	27	1.65
1175489--1175568	11	6.7	11	74	23	65	33	37	1	27	1.65
1175489--1175568	24	3.4	22	76	22	65	33	37	1	27	1.65

Tables:   1   2   3   4

The End!