Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006865.1 Hibiscus syriacus cultivar Beakdansim tig00017464_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  189683

Tables:   1   2   

This is table  2  of  2  ( 159 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
146362--146426
29
2.2
29
86
8
87
16
10
9
63
1.52
146425--146482
30
1.9
30
83
13
75
22
13
8
55
1.66
146516--146585
30
2.3
30
83
9
81
15
11
14
58
1.63
146521--146585
31
2.2
29
79
15
71
13
10
15
60
1.60
150203--150269
21
3.3
19
74
15
62
71
8
16
2
1.24
150210--150270
13
4.3
15
77
10
58
75
8
14
1
1.11
150210--150280
23
3.2
21
76
8
61
74
7
16
1
1.10
150217--150272
13
4.2
13
84
6
76
78
7
12
1
1.02
151491--151596
36
3.0
36
83
6
126
30
18
14
36
1.91
151986--152038
26
2.0
28
92
7
92
33
7
9
49
1.64
151987--152063
26
2.8
26
84
11
84
35
9
7
48
1.64
151958--152132
93
1.9
96
80
8
216
34
12
10
42
1.77
152278--152337
31
2.0
30
93
3
102
30
13
13
43
1.82
152014--152764
277
2.7
277
90
2
1129
31
14
13
39
1.85
152555--152614
31
2.0
30
93
3
102
30
15
13
41
1.85
152866--152927
29
2.1
30
88
8
92
22
16
14
46
1.83
153009--153203
49
4.0
49
89
2
277
31
29
16
22
1.95
153068--153144
24
3.2
24
63
17
59
32
35
15
16
1.91
153516--153559
3
15.0
3
85
4
63
31
0
0
68
0.90
154917--154997
30
2.7
30
82
5
92
22
11
8
58
1.60
155009--155106
30
3.4
28
78
10
81
18
14
6
61
1.53
155057--155122
30
2.2
29
81
5
78
16
10
12
60
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
155063--155128
29
2.3
28
77
10
71
16
12
10
60
1.58
156634--156710
24
3.2
24
77
0
82
61
18
10
10
1.56
158139--158233
30
3.4
30
71
12
76
18
9
9
62
1.53
164204--164253
27
1.9
25
84
8
64
44
20
16
20
1.87
172170--172291
32
3.8
32
82
2
147
29
14
22
32
1.94
172582--172760
65
2.8
65
93
0
324
35
22
12
29
1.91
172844--173513
227
2.9
226
88
4
954
33
24
15
26
1.95
172844--173513
114
5.8
114
88
4
913
33
24
15
26
1.95
173735--174017
84
3.4
84
81
5
304
35
19
18
26
1.95
173822--174048
84
2.7
84
82
4
228
33
21
19
25
1.97
175619--175653
14
2.5
14
85
0
52
17
0
8
74
1.06
179634--179678
14
3.1
15
84
6
58
64
17
6
11
1.46
179633--179682
24
2.1
24
92
0
82
62
16
10
12
1.55
181461--181497
20
2.0
20
89
10
60
18
27
10
43
1.83
181768--182257
2
239.0
2
69
19
241
41
7
3
47
1.48
181973--182012
9
4.4
9
81
12
55
37
2
7
52
1.43
182202--182257
15
3.3
17
80
14
62
42
3
0
53
1.18

Tables:   1   2

The End!