genome.fa.s6868.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006868.1 Hibiscus syriacus cultivar Beakdansim tig00017479_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  314544

Tables:   1   2   

This is table  1  of  2  ( 213 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3530--3554	6	4.2	6	100	0	50	20	16	64	0	1.30
3618--3660	12	3.5	13	78	12	54	16	51	16	16	1.77
3678--3775	2	52.0	2	71	11	64	52	0	0	47	1.00
3773--3827	24	2.3	24	90	0	83	25	47	14	12	1.80
3773--3827	12	4.6	12	81	0	65	25	47	14	12	1.80
16868--16907	15	2.5	17	88	8	57	12	2	2	82	0.87
20049--20073	13	1.9	13	100	0	50	56	0	0	44	0.99
20085--20120	17	2.0	17	89	10	54	41	0	2	55	1.14
20766--20822	28	2.0	28	83	6	71	29	22	15	31	1.95
20973--21096	60	2.1	60	85	7	164	37	12	13	36	1.84
21852--21912	26	2.3	26	97	0	113	31	8	26	34	1.86
25933--26027	41	2.4	41	89	3	131	37	0	14	47	1.45
25951--26033	41	2.0	41	100	0	166	36	0	14	49	1.44
28139--28210	35	2.0	37	94	5	130	16	31	31	19	1.94
28629--28677	20	2.6	18	80	9	53	44	2	18	34	1.61
29961--29996	11	3.4	11	92	3	56	72	0	2	25	0.98
29941--30046	51	2.1	50	80	13	119	73	2	4	18	1.13
30005--30046	19	2.3	18	84	11	59	78	2	2	16	0.96
36601--36981	36	10.9	36	72	19	288	42	13	17	25	1.86
36664--36749	43	2.0	42	88	6	129	51	13	15	19	1.77
36627--36776	79	1.9	81	88	2	232	46	15	16	22	1.84
36764--36926	65	2.5	66	91	3	251	39	12	17	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36894--36989	31	2.9	32	86	9	124	42	15	13	28	1.85
38285--38527	95	2.5	95	83	5	274	32	17	16	33	1.92
39946--39993	24	2.1	23	85	11	64	18	43	0	37	1.51
43588--43622	15	2.4	14	86	9	52	5	17	45	31	1.71
43596--43626	15	2.1	15	100	0	62	6	12	45	35	1.68
44059--44669	53	11.5	53	89	3	849	24	25	18	31	1.97
46010--46095	10	9.1	10	86	9	110	8	8	6	76	1.15
46010--46095	30	3.0	29	86	8	124	8	8	6	76	1.15
56347--56377	15	2.1	15	93	0	53	9	9	45	35	1.70
58120--58178	20	3.0	20	80	9	75	16	27	37	18	1.93
60423--60534	4	28.5	4	66	25	53	73	2	3	20	1.11
60483--60531	25	2.0	25	95	0	89	77	2	2	18	0.96
60483--60534	15	3.6	15	82	12	56	76	1	1	19	0.97
62437--62473	19	1.9	19	88	0	56	32	27	16	24	1.96
62501--62593	21	4.6	19	75	10	60	27	21	21	29	1.99
62580--62768	20	9.3	20	80	9	206	28	26	21	22	1.99
62580--62768	61	3.1	61	92	0	315	28	26	21	22	1.99
62580--62756	41	4.4	39	78	9	185	28	26	22	23	1.99
62580--62768	81	2.3	81	81	9	208	28	26	21	22	1.99
63589--63642	24	2.2	24	93	0	90	20	18	20	40	1.91
65901--65935	18	1.9	18	94	0	61	54	25	2	17	1.57
66113--66393	20	14.7	20	79	9	255	35	21	20	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66113--66401	73	3.8	74	78	9	235	35	21	20	22	1.96
66528--66607	30	2.4	34	78	20	105	55	15	2	27	1.53
66543--66608	30	2.2	30	97	0	123	54	13	1	30	1.48
67980--68066	21	4.1	21	72	5	77	22	19	37	19	1.94
68540--68583	20	2.2	20	100	0	88	52	22	11	13	1.72
68643--68819	20	9.4	20	71	14	108	19	21	22	36	1.95
68647--68783	34	3.9	34	76	11	130	19	22	21	35	1.96
68701--68803	54	1.9	54	83	0	134	19	22	23	34	1.96
68640--68814	74	2.4	74	85	3	262	21	21	21	35	1.96
70820--70870	20	2.5	20	93	0	84	50	21	13	13	1.76
71271--71343	22	3.3	22	88	0	119	21	12	42	23	1.87
71513--71557	20	2.2	20	96	0	81	26	15	26	31	1.96
71529--71619	41	2.2	41	88	0	137	19	20	27	31	1.97
71549--71619	21	3.4	21	72	18	76	16	22	28	32	1.96
71608--71660	20	2.7	20	96	0	97	20	20	18	39	1.92
71648--71701	21	2.6	20	85	8	72	33	20	18	27	1.96
71665--71713	21	2.4	21	86	10	66	38	20	20	20	1.93
71746--71782	19	1.9	19	100	0	74	24	16	27	32	1.96
75152--75236	31	2.7	32	82	7	86	50	12	1	35	1.48
77447--77543	21	4.5	21	74	15	83	31	13	11	43	1.79
79016--79098	41	2.0	41	83	4	105	28	25	24	21	1.99
79126--79181	21	2.7	21	94	0	94	21	19	35	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79262--79320	30	2.0	29	90	9	93	42	16	6	33	1.75
81097--81127	14	2.1	15	94	5	55	3	32	0	64	1.09
82526--82596	20	3.5	20	83	7	90	30	22	26	19	1.98
82620--82698	22	3.8	21	77	15	83	22	20	31	25	1.98
82777--82836	30	2.0	30	90	6	95	43	15	8	33	1.76
86272--86329	26	2.2	26	93	0	98	6	37	1	53	1.38
91593--91638	24	2.0	24	91	4	76	47	0	0	52	1.00
99694--99723	14	2.1	14	93	0	51	36	6	33	23	1.81
118044--118091	23	2.1	23	84	0	60	35	12	16	35	1.87
118569--118641	23	3.2	23	80	7	85	39	20	4	35	1.72
119051--119121	21	3.3	21	73	13	63	39	21	4	35	1.73
119056--119126	23	3.2	22	80	8	81	39	21	4	35	1.73
118165--119960	491	3.7	489	96	1	3349	40	10	7	41	1.68
119549--119611	23	2.7	23	92	0	99	38	20	4	36	1.74
118165--119960	970	1.8	979	97	1	3396	40	10	7	41	1.68
119960--120024	25	2.6	25	97	0	121	36	12	10	40	1.78
122490--122831	183	1.9	183	91	1	569	34	17	13	34	1.89
123248--123310	23	2.7	23	92	0	99	38	20	4	36	1.74
124454--125222	200	3.8	200	98	0	1475	31	17	14	36	1.91
125805--125871	22	3.0	22	95	0	125	28	26	25	19	1.99
126165--126265	29	3.5	29	93	0	166	38	11	10	38	1.77
126584--126739	66	2.4	66	86	4	208	17	27	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132762--132828	22	3.0	22	95	0	125	28	26	25	19	1.99
133122--133222	29	3.5	29	95	0	175	39	11	9	38	1.75
133542--133699	67	2.4	67	86	5	205	17	28	25	28	1.98
134406--135024	200	3.1	200	97	0	1175	30	18	14	37	1.90
135137--135185	19	2.6	19	93	0	80	57	10	2	30	1.43
136976--137039	33	1.9	33	90	0	101	23	48	0	28	1.51
137075--137139	21	3.1	21	90	0	94	16	29	10	43	1.82
139153--139205	24	2.2	24	83	6	63	26	7	13	52	1.66
139343--139385	20	2.3	18	85	14	61	20	16	11	51	1.75
139348--139394	20	2.4	19	82	10	67	19	17	10	53	1.72
139528--139574	20	2.3	20	86	10	69	19	17	8	55	1.67
139853--140345	228	2.2	227	96	1	907	39	7	7	44	1.62
143206--143247	21	2.0	21	95	0	75	30	14	7	47	1.71
143242--143345	33	3.2	33	95	1	183	30	6	17	45	1.74
143922--143980	29	2.0	29	96	0	109	23	5	13	57	1.56
147960--148018	29	2.0	29	93	0	100	23	11	11	52	1.71
148881--150690	904	2.0	905	99	0	3570	30	18	20	30	1.96
153225--153250	13	2.0	13	100	0	52	38	7	23	30	1.83
154876--155115	62	4.0	62	88	6	311	20	17	23	38	1.93
154876--155115	93	2.7	93	85	8	295	20	17	23	38	1.93
154876--155046	31	5.5	31	94	0	297	19	17	22	40	1.91
155010--155129	53	2.3	53	97	0	222	20	19	26	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155664--155715	2	26.0	2	100	0	104	50	0	0	50	1.00
157174--157262	27	3.3	27	93	3	144	38	10	14	37	1.80
158163--158190	2	14.0	2	100	0	56	50	0	0	50	1.00
158392--158436	22	2.0	22	82	0	54	31	4	8	55	1.51
169052--169704	244	2.7	244	89	2	962	40	14	12	32	1.83
169716--169774	29	2.1	28	81	9	66	59	3	3	33	1.31
170257--170330	36	2.1	36	97	2	141	39	8	13	39	1.74
177448--177496	22	2.2	21	79	10	53	65	10	0	24	1.23
178275--178667	202	2.0	201	90	2	619	24	12	18	44	1.85
179646--179673	9	3.1	9	100	0	56	32	0	57	10	1.33

Tables:   1   2