genome.fa.s6890.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006890.1 Hibiscus syriacus cultivar Beakdansim tig00017583_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  227650

Tables:   1   2   

This is table  1  of  2  ( 163 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1659--1697	17	2.3	17	90	0	60	30	35	5	28	1.79
3839--3882	23	1.9	23	85	0	61	34	2	11	52	1.50
7380--7425	23	2.0	23	100	0	92	34	17	26	21	1.95
8067--8113	15	3.1	15	75	19	53	38	2	0	59	1.09
8072--8154	25	3.4	25	72	12	73	39	2	0	57	1.12
8666--8723	29	2.0	29	89	0	89	13	36	27	22	1.92
8766--8836	14	5.4	14	76	19	80	25	39	26	8	1.84
8896--9009	29	3.9	29	78	4	113	21	25	35	16	1.94
8894--9008	58	2.0	58	84	3	151	20	25	36	17	1.94
9038--9062	12	2.1	12	100	0	50	16	36	8	40	1.77
9080--9136	29	2.0	29	92	0	96	17	31	35	15	1.92
11631--11667	16	2.3	16	95	0	65	51	5	16	27	1.66
13883--13909	7	3.9	7	100	0	54	44	14	11	29	1.80
14949--14986	19	2.0	19	100	0	76	5	15	21	57	1.57
18004--18032	2	14.5	2	100	0	58	48	0	0	51	1.00
19496--19537	6	7.0	6	97	0	66	4	33	16	45	1.69
27602--27684	29	2.8	29	92	1	139	43	9	14	32	1.78
32369--32451	29	2.8	29	92	1	139	43	9	14	32	1.78
36281--36335	20	2.8	21	81	10	71	20	9	0	70	1.13
39581--39646	28	2.4	28	78	12	73	31	9	6	53	1.57
44734--44773	16	2.5	17	92	8	66	57	0	0	42	0.98
44775--44803	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45007--45306	147	2.1	146	91	1	485	40	11	9	39	1.73
51030--51070	22	1.9	21	85	14	57	24	26	24	24	2.00
51787--51848	24	2.6	24	87	2	90	27	24	25	22	2.00
55446--55513	13	5.0	13	72	19	50	25	16	30	27	1.96
55442--55541	8	14.0	8	70	23	55	25	16	34	25	1.95
55443--55541	21	4.7	21	80	13	123	25	16	34	24	1.95
55623--55680	30	2.0	29	90	10	91	44	17	5	32	1.70
55623--55682	29	2.0	30	93	6	104	43	16	6	33	1.74
56629--56688	13	5.0	13	71	22	51	25	15	31	28	1.95
56661--56718	21	2.8	21	97	0	107	24	17	36	22	1.95
56798--56855	30	2.0	29	90	10	91	44	17	5	32	1.70
56798--56857	29	2.0	30	93	6	104	43	16	6	33	1.74
57802--57869	13	5.0	13	72	19	50	25	16	30	27	1.96
57798--57897	8	14.0	8	70	23	55	25	16	34	25	1.95
57799--57897	21	4.7	21	80	13	123	25	16	34	24	1.95
57979--58038	29	2.0	30	90	6	95	45	15	6	33	1.72
57979--58038	31	2.0	29	90	6	93	45	15	6	33	1.72
61415--61480	24	2.8	24	84	11	91	30	25	22	21	1.99
64805--64832	2	14.0	2	100	0	56	50	0	0	50	1.00
65105--65147	21	2.0	21	100	0	86	9	18	18	53	1.70
66095--66127	12	2.8	12	86	13	50	3	60	0	36	1.12
71555--71733	64	2.8	63	83	8	218	29	17	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78184--78362	64	2.8	63	83	8	218	29	17	24	28	1.98
80650--80732	39	2.1	39	90	0	130	50	18	4	26	1.66
80875--80925	19	2.8	18	85	5	66	33	13	3	49	1.61
84519--84560	21	2.0	21	95	0	75	23	21	23	30	1.99
85244--85384	31	4.5	31	90	0	219	41	20	19	19	1.91
91281--91343	30	2.1	31	82	8	76	39	23	6	30	1.80
92911--92944	18	1.9	18	88	5	52	58	0	0	41	0.98
93444--93592	59	2.5	59	89	3	210	33	24	7	34	1.83
93482--93581	30	3.3	30	67	12	80	33	28	7	32	1.84
94300--94336	11	3.5	11	85	7	51	59	0	0	40	0.97
94304--94351	21	2.3	22	82	7	55	56	4	0	39	1.19
98305--98347	21	2.0	21	90	0	68	16	6	46	30	1.73
100550--100615	31	2.3	28	76	18	82	21	22	28	27	1.99
104608--104706	49	2.0	49	100	0	198	34	24	23	18	1.96
105938--106060	31	3.9	31	76	15	119	29	19	20	30	1.97
114429--114465	20	1.9	19	89	10	58	45	5	24	24	1.74
116341--116393	20	2.7	20	90	0	79	24	26	20	28	1.99
116936--116977	19	2.2	19	86	0	57	54	23	16	4	1.61
116903--116977	38	2.0	38	81	5	89	50	21	18	9	1.74
116987--117071	33	2.5	33	96	1	152	11	25	23	38	1.89
119084--119172	42	2.1	42	80	0	106	21	38	16	23	1.93
120560--120595	14	2.6	14	95	0	63	30	0	25	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120722--120780	19	3.4	19	66	22	56	13	20	18	47	1.82
123055--123079	12	2.1	12	100	0	50	0	28	0	72	0.86
123254--123307	24	2.2	24	90	0	81	38	20	16	24	1.92
124358--124415	20	2.9	20	97	0	107	37	24	22	15	1.93
124439--124491	14	3.5	14	76	18	61	11	20	20	47	1.81
124434--124484	16	3.2	16	74	20	61	11	23	19	45	1.83
126491--126558	20	3.5	19	82	6	82	38	23	23	14	1.92
126547--126604	14	3.9	14	75	16	62	48	24	17	10	1.78
126531--126609	32	2.4	33	93	2	133	46	22	18	11	1.81
126638--126695	14	3.9	14	79	16	71	10	17	24	48	1.78
126625--126711	32	2.7	33	94	3	158	12	18	21	47	1.82
126696--126750	20	2.8	19	83	8	65	16	23	23	36	1.94
127232--127271	18	2.2	18	90	0	62	15	12	45	27	1.82
128597--128655	20	3.0	20	87	0	73	42	22	18	16	1.89
128918--128961	22	2.0	22	90	0	70	20	15	43	20	1.88
129149--129262	20	5.7	20	82	6	122	24	18	26	30	1.98
129129--129264	41	3.3	41	79	6	159	24	17	25	33	1.97
129252--129365	21	5.5	21	85	3	151	18	25	16	39	1.91
129232--129365	62	2.2	61	85	6	173	19	24	17	38	1.93
129252--129365	41	2.8	41	93	1	183	18	25	16	39	1.91
129232--129380	62	2.4	62	78	2	156	21	23	18	36	1.95
130193--130329	59	2.3	60	83	6	163	35	13	17	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130203--130338	60	2.3	59	83	6	159	34	13	16	36	1.87
132787--132854	29	2.3	30	94	2	120	38	23	20	17	1.93
149477--149525	25	2.0	25	91	0	80	34	28	14	22	1.93
149992--150024	16	2.0	17	88	5	50	30	24	0	45	1.53
149980--150024	15	2.8	17	77	12	51	31	20	2	46	1.62
158636--158670	15	2.3	15	95	0	61	22	20	28	28	1.98
159981--160022	21	2.0	22	86	9	61	33	28	14	23	1.94
161957--162002	18	2.6	18	86	3	67	39	6	26	28	1.81
161957--162014	17	3.4	17	80	7	64	37	5	25	31	1.78
164597--164639	21	2.0	21	81	0	50	27	27	25	18	1.98
165367--165463	31	3.2	30	70	13	81	26	19	20	32	1.97
165446--165604	30	5.3	30	95	0	275	22	23	24	29	1.99
170089--170185	31	3.2	30	70	13	81	27	17	20	34	1.95
170174--170326	30	5.1	30	95	0	272	22	22	24	30	1.99
171758--171917	59	2.7	58	79	11	146	43	6	19	31	1.76
172701--172725	2	12.5	2	100	0	50	52	0	0	48	1.00
173166--173620	112	4.1	107	88	5	576	45	13	14	26	1.81
173166--173620	217	2.1	218	89	4	682	45	13	14	26	1.81
174233--174289	23	2.4	23	76	2	60	40	12	8	38	1.74
177349--177408	27	2.3	26	78	18	63	40	8	16	35	1.79
177419--177454	12	3.0	12	87	0	54	30	8	25	36	1.85
180834--180878	21	2.1	21	95	0	81	24	24	13	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180787--180886	21	4.9	21	72	12	64	31	25	13	31	1.93
181361--181404	22	2.0	22	90	0	70	20	34	15	29	1.94
183922--184040	42	2.8	42	87	0	157	21	36	19	23	1.95
183922--184019	21	4.7	21	81	3	108	21	34	19	24	1.96
183926--184040	21	5.5	21	78	4	106	20	36	20	22	1.95
184904--188094	800	4.0	800	97	0	5875	30	18	17	33	1.94
188783--188817	13	2.6	14	86	9	54	25	0	17	57	1.40
188798--188945	64	2.3	64	92	1	244	28	2	17	52	1.56
191492--191545	24	2.2	24	93	0	90	40	20	18	20	1.91
191492--191559	24	2.8	24	84	0	64	38	20	17	23	1.93

Tables:   1   2