genome.fa.s6890.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006890.1 Hibiscus syriacus cultivar Beakdansim tig00017583_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  227650

Tables:   1   2   

This is table  2  of  2  ( 163 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192286--192325	16	2.7	15	85	11	55	67	0	5	27	1.11
192505--192602	20	4.8	20	71	17	67	35	13	23	27	1.92
192515--192598	40	2.1	41	84	2	107	36	11	22	28	1.90
192534--192594	21	3.0	21	81	13	74	31	11	22	34	1.90
194239--194376	60	2.3	60	82	3	161	45	5	16	31	1.71
194290--194403	60	1.9	60	80	10	135	46	4	18	30	1.68
197204--197257	19	2.8	19	94	5	92	50	24	5	20	1.69
199273--199318	3	15.3	3	100	0	92	34	0	0	65	0.93
201383--201426	13	3.5	13	90	6	72	18	52	15	13	1.75
201444--201529	32	2.7	33	81	5	113	51	0	0	48	1.00
201489--201546	2	29.5	2	82	3	73	48	0	0	51	1.00
201567--201598	12	2.7	12	95	0	55	31	46	12	9	1.73
203925--204024	21	4.8	21	70	10	53	33	26	18	23	1.97
204012--204162	20	7.5	20	80	7	117	36	27	18	17	1.94
204012--204162	40	3.8	40	83	6	180	36	27	18	17	1.94
204542--204612	33	2.2	33	94	0	124	11	23	16	47	1.79
204692--204768	21	3.7	21	81	6	102	48	16	22	12	1.80
204753--204809	14	3.7	14	75	20	60	43	22	24	8	1.81
204746--204825	33	2.4	33	95	0	142	47	22	21	8	1.78
204843--204899	14	3.7	14	72	20	51	8	22	22	45	1.80
204826--204948	33	3.5	33	84	10	147	11	23	17	47	1.80
204884--204948	21	3.1	21	80	4	87	10	24	15	49	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206633--206855	93	2.4	93	98	0	428	22	13	18	44	1.85
206971--207027	14	3.7	14	72	20	51	43	24	22	8	1.81
206985--207076	19	5.4	18	72	24	65	46	28	17	7	1.75
206953--207076	33	3.7	33	91	1	185	45	27	17	8	1.78
207002--207060	14	3.9	14	76	20	64	47	28	16	6	1.72
207072--207230	19	8.6	19	82	7	175	10	19	23	45	1.81
207077--207214	52	2.5	54	88	5	190	9	19	23	47	1.78
209153--209188	14	2.6	14	95	0	63	33	0	22	44	1.53
209279--209368	19	4.9	19	82	14	127	46	15	23	14	1.82
209279--209385	53	2.0	53	94	1	189	45	14	24	14	1.83
209381--209617	53	4.5	53	84	9	331	13	22	17	46	1.83
209399--209564	86	1.9	86	100	0	332	13	23	17	45	1.83
209381--209617	72	3.4	71	83	11	292	13	22	17	46	1.83
209452--209631	33	5.2	33	85	9	261	12	22	18	46	1.82
212112--212158	24	2.0	24	87	8	69	38	21	14	25	1.92
212851--213079	20	11.4	20	84	1	226	19	17	25	37	1.94
217263--217296	17	2.0	17	88	0	50	44	2	0	52	1.16
218417--218517	47	2.1	47	81	0	121	27	0	39	31	1.63
224140--224187	19	2.5	19	93	3	78	35	27	14	22	1.93
224352--224432	19	4.1	20	75	9	76	23	19	22	34	1.96
224357--224435	40	2.0	40	94	0	140	22	18	21	36	1.95

Tables:   1   2

The End!