genome.fa.s6894.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006894.1 Hibiscus syriacus cultivar Beakdansim tig00017596_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  213556

Tables:   1   2   

This is table  2  of  2  ( 201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146855--146985	19	7.7	19	66	26	96	16	22	18	41	1.89
146859--146985	33	3.8	33	86	8	195	17	22	18	41	1.90
149277--149301	12	2.1	12	100	0	50	0	28	0	72	0.86
150521--150614	33	2.8	33	90	3	136	45	18	22	13	1.84
150521--150579	19	3.4	19	68	22	56	47	16	18	16	1.83
150614--150657	18	2.4	18	96	3	79	11	15	27	45	1.81
150629--150787	33	4.8	33	90	3	223	11	20	22	45	1.83
150614--150755	19	8.3	19	70	21	86	11	19	22	46	1.81
150680--150768	14	5.6	14	71	23	70	11	24	20	43	1.84
152354--152413	21	2.9	20	73	11	59	20	13	45	21	1.85
152781--152848	20	3.5	19	82	6	82	38	23	23	14	1.92
152837--152957	14	7.7	14	73	21	98	49	23	17	9	1.76
152821--152964	32	4.4	33	95	0	256	47	22	18	11	1.80
152821--152975	65	2.4	64	91	3	240	47	23	18	10	1.79
152971--153053	19	4.6	19	76	14	95	13	20	20	45	1.84
153038--153092	20	2.8	20	86	2	67	14	23	23	38	1.92
154920--154978	20	3.0	20	87	0	73	42	22	18	16	1.89
155012--155040	15	1.9	15	100	0	58	17	20	13	48	1.81
155467--155601	20	6.7	20	78	7	121	25	17	22	33	1.96
155471--155604	61	2.2	61	87	0	196	25	17	22	35	1.95
155487--155622	61	2.2	61	82	2	166	24	19	22	33	1.97
158169--158214	21	2.2	21	92	0	74	15	28	19	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158211--158303	20	4.7	20	87	0	141	39	17	18	24	1.91
158290--158341	20	2.6	20	96	0	95	32	25	19	23	1.97
158211--158323	60	1.9	59	85	7	156	38	18	18	24	1.93
158521--158586	22	3.0	22	88	0	96	24	37	15	22	1.92
158922--158969	19	2.5	19	100	0	96	10	20	22	45	1.81
160558--160713	31	5.0	31	94	1	260	20	19	22	37	1.94
163893--163937	21	2.1	21	87	0	63	31	28	24	15	1.96
164741--164896	31	5.0	31	91	4	244	20	19	22	37	1.94
167518--167637	20	5.6	20	75	14	114	43	23	17	15	1.87
167561--167604	14	3.1	14	83	0	61	50	25	15	9	1.74
167521--167649	68	1.9	68	90	3	206	44	22	17	14	1.85
167680--167745	20	3.3	20	91	0	114	15	22	24	37	1.92
168232--168273	21	2.2	19	87	12	59	21	35	19	23	1.96
169721--169756	14	2.6	14	90	0	54	30	0	22	47	1.52
169961--170014	14	3.5	14	73	22	54	11	24	20	44	1.83
169939--170034	33	2.9	34	90	3	149	12	23	20	42	1.86
170006--170079	20	3.7	20	85	3	105	18	20	24	36	1.95
173394--173452	20	3.0	20	87	0	91	23	20	25	30	1.98
173456--173496	20	2.0	20	95	0	73	24	19	17	39	1.92
173493--173538	21	2.2	21	88	0	65	39	15	26	19	1.91
175050--175103	2	27.0	2	100	0	108	50	0	0	50	1.00
179440--179475	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179764--179803	20	2.0	20	85	0	53	45	5	2	47	1.38
181069--181125	2	28.5	2	100	0	114	49	0	0	50	1.00
193161--193230	21	3.4	21	73	15	74	34	24	20	21	1.97
193158--193236	40	2.0	40	94	0	140	36	21	18	22	1.95
193178--193241	19	3.3	19	74	8	74	35	20	20	23	1.96
193406--193453	19	2.5	19	93	3	78	22	14	27	35	1.93
200317--200350	17	2.0	17	88	0	50	52	0	2	44	1.16
204378--204532	21	7.7	20	71	7	80	38	24	17	19	1.93
204503--204554	20	2.6	20	81	6	61	42	25	19	13	1.87
204541--204731	20	9.6	20	83	4	224	35	25	17	20	1.95
204503--204731	40	5.8	38	85	6	215	37	25	17	19	1.94
205422--205468	24	2.0	24	87	8	69	25	14	21	38	1.92
205643--205667	12	2.1	12	100	0	50	72	0	28	0	0.86
207948--208127	33	5.2	33	87	9	261	46	18	22	12	1.82
207962--208198	53	4.5	52	85	12	313	46	17	22	13	1.83
207962--208198	72	3.4	72	82	12	298	46	17	22	13	1.83
208015--208180	86	1.9	86	100	0	332	45	17	23	13	1.83
208034--208205	86	2.0	86	87	6	251	44	17	23	14	1.85
208175--208290	53	2.2	52	83	3	142	20	23	17	38	1.93
208211--208300	19	4.9	19	82	14	127	14	23	15	46	1.82
208391--208427	14	2.6	14	91	0	65	45	21	0	32	1.52
210345--210503	19	8.6	19	82	7	175	45	23	19	10	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
210345--210498	52	2.8	55	87	5	197	46	24	18	10	1.80
210499--210589	14	5.4	17	73	23	77	7	17	28	46	1.76
210499--210621	33	3.7	33	90	2	176	8	17	27	45	1.79
210547--210603	14	3.7	14	72	20	51	8	22	24	43	1.81
210669--210941	93	3.1	87	89	6	315	44	18	13	23	1.85
210719--210941	93	2.4	93	97	0	419	44	17	13	23	1.85
212625--212650	12	2.2	12	100	0	52	46	23	23	7	1.78
212617--212719	31	3.3	31	95	2	188	48	19	22	9	1.77
212637--212701	19	3.7	19	75	23	79	49	20	21	9	1.76
212739--212795	14	3.7	14	75	20	60	8	24	22	43	1.81
212734--212802	33	2.1	33	100	0	138	8	23	20	47	1.77
212783--212856	21	3.5	21	80	7	96	13	21	17	47	1.82
212934--213004	33	2.2	33	92	0	115	47	18	22	11	1.80
213376--213528	20	7.6	20	82	7	175	17	18	27	35	1.94
213371--213547	81	2.2	83	80	10	213	21	18	26	33	1.96

Tables:   1   2

The End!