Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006920.1 Hibiscus syriacus cultivar Beakdansim tig00017743_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85889

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
589--645
30
1.9
29
89
3
87
28
7
22
42
1.80
592--640
15
3.3
15
76
0
53
26
8
24
40
1.83
5871--5992
43
2.9
42
78
4
120
31
20
14
32
1.93
7011--7035
2
12.5
2
100
0
50
52
48
0
0
1.00
7625--7652
3
9.3
3
100
0
56
35
0
0
64
0.94
7942--8292
175
2.0
175
94
0
612
25
28
22
23
1.99
9413--9454
11
3.3
12
84
15
50
23
4
0
71
1.05
10685--10749
33
2.0
33
84
0
85
40
10
40
9
1.72
11335--11364
8
3.8
8
90
0
51
0
16
0
83
0.65
11332--11362
14
2.1
15
94
5
55
0
16
0
83
0.64
11759--11784
6
4.3
6
100
0
52
0
30
38
30
1.58
13099--13150
26
2.0
27
88
3
79
48
0
1
50
1.12
15125--15273
25
6.0
24
69
19
74
72
4
6
17
1.21
15590--15615
10
2.6
10
100
0
52
92
0
0
7
0.39
15638--15691
22
2.4
21
77
17
56
77
1
7
12
1.05
17456--17542
36
2.4
37
92
1
140
32
9
16
42
1.79
17597--17709
37
3.1
37
92
2
192
40
15
17
26
1.89
17602--17733
37
3.6
36
84
8
146
40
14
19
25
1.89
17798--18027
116
2.0
116
88
1
345
23
18
25
32
1.97
19489--19629
64
2.2
63
81
9
162
33
18
22
25
1.97
19617--19674
20
2.6
22
89
10
84
31
20
22
25
1.98
20569--20629
31
2.0
31
84
12
81
26
18
18
37
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20959--20991
2
16.5
2
100
0
66
51
0
0
48
1.00
22553--22632
42
2.0
40
82
5
97
3
16
3
76
1.08
25545--25595
4
13.0
4
91
4
86
72
1
0
25
0.95
36429--36565
36
3.8
36
96
0
247
25
17
14
42
1.87
37800--37835
6
6.0
6
90
0
54
11
66
2
19
1.35
44330--44466
36
3.8
36
91
0
220
26
16
15
42
1.87
50214--50337
30
4.0
31
74
11
110
32
17
18
31
1.94
51456--51612
64
2.5
64
77
12
162
27
19
19
33
1.96
61140--61194
24
2.3
24
93
0
101
56
3
14
25
1.55
62466--62498
16
2.1
16
100
0
66
12
36
21
30
1.90
62960--62998
17
2.4
17
95
4
71
43
0
5
51
1.24
65695--65994
35
8.4
35
72
18
108
41
9
5
43
1.60
65736--65989
35
7.1
37
79
14
234
41
10
5
42
1.62
65817--65865
12
3.8
12
80
19
62
38
10
8
42
1.68
65817--65871
28
2.0
28
92
0
92
38
12
7
41
1.71
65738--65934
100
2.0
99
86
6
274
40
11
6
41
1.66
65703--65961
135
1.9
137
86
5
373
42
10
5
41
1.62
79723--80006
75
3.8
75
87
1
372
38
14
36
11
1.82
80055--80152
33
3.2
33
81
12
102
51
2
45
1
1.19
80098--80142
14
3.3
14
85
11
58
55
0
44
0
0.99
80056--80202
51
2.9
51
81
5
154
50
2
45
2
1.24
80091--80172
6
13.2
6
75
12
67
53
1
45
0
1.08

Tables:   1

The End!