Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006921.1 Hibiscus syriacus cultivar Beakdansim tig00017744_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77087

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2401--2447
17
2.7
17
81
18
53
55
8
2
34
1.42
6398--6451
19
2.7
19
80
13
56
33
3
1
61
1.25
8766--8810
17
2.6
17
83
16
58
51
8
4
35
1.54
9203--9348
66
2.2
66
96
0
265
38
6
15
39
1.74
25592--25629
18
2.1
18
95
0
67
15
23
47
13
1.81
26939--27099
42
3.8
42
73
6
126
37
22
13
26
1.91
26939--27099
21
7.6
21
74
9
103
37
22
13
26
1.91
29634--29689
26
2.2
26
86
0
76
35
19
5
39
1.75
29644--29698
26
2.1
26
96
0
101
36
23
3
36
1.73
30908--30938
16
1.9
16
93
0
53
48
6
3
41
1.45
34437--34515
30
2.6
30
74
7
79
44
1
6
48
1.36
35305--35341
16
2.2
17
90
4
58
35
0
0
64
0.94
50306--50410
54
1.9
54
94
0
183
26
20
18
35
1.95
55108--55163
26
2.0
28
86
10
80
37
5
0
57
1.22
57398--57503
35
2.9
36
91
5
178
33
15
16
33
1.90
58067--58129
31
2.0
31
90
0
99
26
31
9
31
1.88
58998--59048
20
2.5
20
90
0
75
17
17
29
35
1.93
59011--59055
20
2.2
20
100
0
90
15
15
33
35
1.89
59407--59441
19
1.9
17
100
0
52
34
31
0
34
1.58
61723--61802
23
3.6
22
77
5
90
23
26
25
25
2.00
61727--61821
44
2.2
42
85
7
120
24
23
25
27
2.00
61723--61821
21
4.7
20
75
10
74
23
23
26
27
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67735--67759
11
2.3
11
100
0
50
48
0
8
44
1.32
72449--72486
19
2.0
19
100
0
76
15
10
26
47
1.78
73899--74005
36
3.0
35
90
5
162
34
13
15
36
1.87
76653--76716
25
2.5
25
77
7
67
40
6
4
48
1.49
76673--76729
26
2.2
25
84
3
69
35
7
1
56
1.37

Tables:   1

The End!