genome.fa.s6923.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006923.1 Hibiscus syriacus cultivar Beakdansim tig00017750_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57616

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2038--2124	28	3.1	28	72	8	79	45	8	16	29	1.75
2054--2125	27	2.6	27	75	12	67	45	5	18	30	1.72
11116--11148	16	1.9	17	88	11	50	36	0	3	60	1.12
11111--11150	17	2.3	19	79	16	50	32	0	2	65	1.06
12689--12762	34	2.2	34	81	11	82	22	1	13	62	1.39
12700--12776	34	2.2	34	84	11	95	22	0	16	61	1.35
15445--15482	20	1.9	20	88	0	58	34	31	15	18	1.92
15510--15580	19	3.7	19	92	0	124	30	29	15	23	1.95
15547--15690	65	2.2	65	84	6	186	29	23	19	27	1.98
26646--26721	31	2.5	31	76	8	82	42	11	3	42	1.60
28431--28470	19	2.1	19	86	9	55	47	0	5	47	1.24
31034--31087	20	2.6	21	73	2	56	25	20	20	33	1.97
32495--32607	59	1.9	59	80	7	131	42	25	9	22	1.84
33984--37664	4	926.8	4	98	1	7146	49	25	0	24	1.50
37817--38964	226	5.1	226	89	2	1720	31	16	14	38	1.88
38281--38873	108	5.3	108	67	16	355	31	16	13	38	1.87
43964--45752	200	9.1	199	79	8	870	29	13	16	39	1.87
44698--45752	200	5.3	201	85	4	1408	28	13	16	40	1.87
44686--45752	400	2.7	394	89	3	1640	28	13	16	40	1.87
45462--45498	15	2.5	15	90	0	56	24	8	18	48	1.75
45937--45988	24	2.2	24	82	6	61	51	11	3	32	1.56
45980--46016	11	3.5	11	96	3	67	56	0	24	18	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45980--46016	5	7.0	5	88	11	56	56	0	24	18	1.41
45980--46016	16	2.3	15	86	13	56	56	0	24	18	1.41
48832--50154	199	6.8	199	91	3	2195	27	14	15	42	1.86
48832--50154	577	2.3	583	93	3	2214	27	14	15	42	1.86
50527--50575	19	2.6	19	96	0	89	55	10	2	32	1.45
52472--52507	9	4.0	9	88	0	54	2	52	8	36	1.46
53992--54109	19	5.9	19	71	11	83	33	16	2	46	1.61
54048--54125	19	3.9	19	81	5	75	30	16	3	48	1.64

Tables:   1

The End!