genome.fa.s6974.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006974.1 Hibiscus syriacus cultivar Beakdansim tig00017960_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  366595

Tables:   1   2   

This is table  2  of  2  ( 219 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187131--187191	32	1.9	32	100	0	122	34	9	21	34	1.86
191945--192046	30	3.2	30	64	12	78	41	12	7	38	1.72
191945--192202	64	4.0	65	94	2	450	43	10	10	35	1.73
196280--196639	179	2.0	180	99	0	713	33	31	11	23	1.90
198577--198618	22	1.9	22	85	9	59	50	0	2	47	1.14
204675--204886	115	1.8	115	84	2	289	49	18	13	18	1.80
206731--206775	22	2.1	21	83	4	54	28	4	4	62	1.34
213186--213265	31	2.6	31	91	0	124	20	21	21	37	1.94
213188--213279	31	3.0	31	88	3	123	21	20	21	35	1.96
218776--218816	19	2.0	21	86	9	59	19	4	4	70	1.24
225310--225360	18	2.8	18	87	0	84	29	37	19	13	1.90
225792--225841	17	2.8	18	81	6	57	34	6	0	60	1.21
226290--226328	20	2.0	20	85	10	53	38	10	0	51	1.36
231077--231133	24	2.4	24	100	0	114	33	3	28	35	1.74
232721--232773	18	3.0	18	88	2	81	18	45	22	13	1.84
232739--232763	13	1.9	13	100	0	50	16	48	24	12	1.79
232774--232855	29	2.8	29	86	0	110	25	10	20	42	1.85
232832--232898	29	2.4	28	82	2	71	28	5	23	41	1.78
239440--239476	13	2.8	13	91	0	56	18	43	24	13	1.86
239461--239516	17	3.5	17	79	18	75	17	41	23	17	1.90
239439--239516	30	2.6	30	89	2	120	19	42	23	15	1.89
239470--239504	13	2.8	13	86	4	54	20	40	22	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239524--239603	29	2.8	29	94	0	133	22	8	22	46	1.79
239582--239650	30	2.3	30	87	2	95	28	4	21	44	1.71
245281--245434	77	2.0	79	94	2	276	27	8	27	36	1.86
253094--253118	6	4.2	6	100	0	50	68	32	0	0	0.90
260047--260080	16	2.1	16	100	0	68	11	26	5	55	1.58
266293--266403	24	4.6	24	85	0	141	19	12	17	50	1.77
266292--266401	12	9.2	12	69	7	71	20	12	17	50	1.78
268524--268582	22	2.6	22	87	10	84	18	23	23	33	1.97
270988--271100	59	1.9	59	87	0	163	28	15	25	30	1.95
271159--271204	20	2.2	21	88	3	67	17	6	17	58	1.59
271226--271398	92	1.9	91	87	1	256	39	6	23	30	1.80
271222--271398	45	3.9	45	85	2	246	38	6	24	30	1.80
271883--271930	22	2.2	22	92	0	78	18	25	16	39	1.91
274256--274345	6	15.3	6	75	11	80	81	1	15	2	0.86
274234--274348	14	8.2	14	72	17	87	80	1	13	3	0.91
274251--274333	30	2.6	30	85	11	96	80	1	15	2	0.87
274256--274345	33	2.7	32	81	10	76	81	1	15	2	0.86
274256--274345	21	4.4	20	77	14	94	81	1	15	2	0.86
274248--274355	36	2.8	38	80	10	123	79	0	15	3	0.92
278948--278981	17	2.1	16	88	5	50	14	8	0	76	1.01
283442--283496	22	2.5	22	78	0	65	20	23	14	41	1.89
285793--285894	11	8.9	11	74	19	57	80	2	13	2	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285787--285897	25	4.5	24	75	18	95	81	2	13	2	0.92
285793--285895	6	16.8	6	74	16	79	80	2	13	2	0.94
285787--285894	5	21.4	5	71	22	66	80	2	13	2	0.93
285787--285897	34	3.3	33	82	13	129	81	2	13	2	0.92
285805--285896	13	6.9	13	70	26	68	81	2	14	2	0.88
285821--285901	42	2.0	41	85	4	110	80	2	13	3	0.95
289821--289891	19	3.5	19	71	17	61	60	9	25	4	1.46
289803--289936	43	3.2	43	92	2	209	54	11	28	5	1.58
299228--299448	42	5.0	42	70	15	142	28	19	20	31	1.97
299359--299383	13	1.9	13	100	0	50	32	24	20	24	1.98
299371--299500	42	3.1	42	86	1	163	29	17	20	32	1.96
299886--300128	106	2.3	106	86	2	317	30	19	25	25	1.98
299886--300086	53	3.8	53	90	0	312	29	20	27	22	1.99
300527--300656	42	3.1	42	93	1	206	53	12	30	4	1.58
300533--300643	19	5.2	21	67	21	70	55	12	27	4	1.56
302795--302923	59	2.2	59	85	0	168	28	18	24	27	1.98
303048--303264	45	4.8	45	89	3	328	37	6	23	32	1.81
307298--307354	24	2.4	24	88	2	80	21	17	3	57	1.54
308582--308636	2	27.5	2	100	0	110	49	0	0	50	1.00
310152--310209	26	2.3	23	78	18	62	31	5	0	63	1.16
310545--310574	7	4.3	7	95	0	51	30	0	3	66	1.07
312597--312650	14	3.8	14	82	4	63	24	14	9	51	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315890--315919	14	2.1	14	93	6	51	90	0	10	0	0.47
315894--315924	12	2.7	12	95	5	55	90	0	9	0	0.46
319860--319924	32	2.0	33	96	3	123	20	21	9	49	1.76
320462--320562	50	2.0	50	88	7	152	39	11	19	28	1.87
320872--320926	22	2.5	22	84	0	74	32	12	14	40	1.84
321330--322323	113	8.9	113	90	4	1432	37	15	19	27	1.92
321323--322323	223	4.5	225	89	3	1467	37	15	18	27	1.92
321323--322323	336	3.0	335	89	4	1485	37	15	18	27	1.92
321361--322325	449	2.2	445	92	3	1615	37	15	19	27	1.92
323548--323591	15	2.9	15	83	12	63	25	2	0	72	0.96
324333--324365	14	2.4	14	100	0	66	48	9	9	33	1.66
324524--324560	20	1.9	19	89	10	58	45	10	24	18	1.81
328377--328419	13	3.3	12	87	6	50	23	30	32	13	1.93
328376--328413	13	2.9	13	92	0	58	23	28	31	15	1.96
329912--329960	24	2.0	24	84	0	62	20	12	16	51	1.76
329946--329977	12	2.7	12	95	0	55	15	18	9	56	1.66
333062--333112	3	17.0	3	76	8	50	39	1	0	58	1.09
333062--333116	12	5.1	12	73	22	59	40	1	0	58	1.09
335789--335848	30	2.0	30	100	0	120	40	13	23	23	1.90
336958--337122	85	1.9	86	88	3	253	29	16	20	33	1.95
338681--339098	191	2.2	192	79	4	457	38	12	10	38	1.78
342296--342330	16	2.2	16	94	0	61	62	5	8	22	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351278--351378	36	2.8	34	78	10	94	30	15	12	40	1.85
351489--351760	103	2.6	103	82	5	318	35	15	11	37	1.84
351712--351797	37	2.4	37	92	7	142	25	17	15	41	1.88
351489--351745	104	2.5	103	81	6	315	35	15	11	37	1.84
351877--352150	140	2.0	138	86	1	377	30	28	14	26	1.95
352901--352941	18	2.3	18	100	0	82	68	0	12	19	1.21
355492--355582	5	19.4	5	72	17	61	16	2	4	76	1.04
355504--355582	9	9.1	9	73	13	67	17	2	2	77	1.00
355505--355555	17	3.0	17	82	0	75	19	1	1	76	0.98
355508--355549	22	1.9	22	85	9	59	16	2	2	78	0.96
366047--366081	7	4.7	7	89	10	52	80	2	17	0	0.84

Tables:   1   2

The End!