genome.fa.s6981.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006981.1 Hibiscus syriacus cultivar Beakdansim tig00017984_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  188633

Tables:   1   2   

This is table  2  of  2  ( 161 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156522--157052	40	13.3	40	90	1	708	29	17	12	39	1.87
156667--156769	20	5.2	20	64	25	65	31	18	14	35	1.91
156921--156985	20	3.2	20	63	8	51	23	15	15	46	1.83
157115--157219	37	2.8	37	79	0	120	40	12	13	33	1.82
157753--157797	23	2.0	22	91	8	72	28	4	0	66	1.11
157755--157851	23	4.3	23	72	25	68	27	6	1	64	1.23
157755--157857	15	6.9	15	73	17	58	28	5	0	65	1.22
157878--157918	11	3.6	11	87	6	55	24	4	4	65	1.32
157927--157969	2	21.5	2	100	0	86	48	0	0	51	1.00
158132--158166	18	1.9	18	88	0	52	40	2	0	57	1.14
160217--160258	21	2.0	21	95	0	75	26	28	21	23	1.99
160361--160437	20	4.1	20	72	24	69	12	27	38	20	1.89
160384--160411	14	2.0	14	100	0	56	14	28	28	28	1.95
163304--163373	34	2.1	32	89	5	104	21	31	15	31	1.95
163656--163697	21	2.0	21	95	0	75	26	28	21	23	1.99
163781--163859	21	4.0	21	76	18	89	12	27	39	20	1.89
163803--163832	15	2.0	15	100	0	60	13	26	33	26	1.93
163782--163853	36	2.0	36	91	0	117	13	27	37	20	1.91
166515--166582	22	3.1	22	95	0	127	36	26	13	23	1.92
167399--168667	106	12.0	106	88	2	1781	33	24	18	23	1.96
169398--169502	37	2.8	37	79	0	120	40	12	13	33	1.82
170056--170165	24	4.9	23	73	18	97	28	4	0	66	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170185--170225	11	3.6	11	87	6	55	24	4	4	65	1.32
170181--170228	11	4.4	11	84	7	53	20	4	4	70	1.21
170181--170231	23	2.3	23	75	3	59	19	3	5	70	1.24
170760--170834	22	3.4	21	77	15	64	16	2	5	76	1.09
170786--170855	25	2.9	25	82	14	69	18	5	2	72	1.17
171310--171366	28	2.0	28	83	6	71	35	14	14	36	1.86
171338--171492	37	4.2	37	75	6	118	30	20	14	34	1.92
171368--171508	76	1.9	73	82	7	176	28	21	14	36	1.92
172064--172238	91	1.9	92	91	1	289	40	14	21	24	1.90
171823--172479	332	2.0	331	89	3	1000	37	16	20	25	1.93
172616--172724	3	36.7	3	88	5	159	33	1	1	63	1.16
173210--173253	16	2.8	16	83	13	56	54	4	4	36	1.41
174024--174050	2	13.5	2	100	0	54	48	0	0	51	1.00
175090--175121	15	2.3	15	89	10	50	0	21	12	65	1.25
176087--176437	136	2.6	136	86	4	475	26	22	17	34	1.95
177296--177390	7	13.1	7	72	18	63	6	11	1	81	0.93
177304--177388	30	2.9	28	83	15	100	7	10	1	81	0.93
177296--177390	50	1.9	50	84	4	129	6	11	1	81	0.93
177312--177384	17	3.9	17	74	23	67	6	9	1	82	0.91

Tables:   1   2

The End!