Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007001.1 Hibiscus syriacus cultivar Beakdansim tig00018069_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104959

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
378--412
17
2.1
17
88
0
52
77
2
5
14
1.07
2532--2599
29
2.4
30
82
9
97
30
2
20
45
1.66
3499--3527
2
14.5
2
100
0
58
51
0
0
48
1.00
4916--4951
15
2.5
15
86
4
56
50
22
0
27
1.50
5871--5942
24
3.0
24
79
4
92
51
15
9
23
1.73
5871--5939
23
2.9
24
80
4
86
52
14
10
23
1.72
5871--5976
47
2.2
48
80
8
110
49
14
12
24
1.77
8083--8144
28
2.3
26
81
10
81
14
8
33
43
1.75
7868--8601
244
2.9
245
88
6
1025
24
11
26
37
1.89
8332--8416
38
2.3
38
85
6
111
11
11
36
40
1.79
9011--9043
17
1.9
17
88
11
50
30
0
0
69
0.88
9218--9263
18
2.8
16
80
6
56
30
28
6
34
1.82
11506--11550
13
3.5
13
81
3
56
24
20
0
55
1.43
16724--16787
16
4.0
16
91
0
101
20
32
18
28
1.96
24244--24312
32
2.2
32
83
0
84
17
28
26
27
1.97
34253--34309
17
3.4
16
85
7
78
8
1
3
85
0.77
34261--34302
8
5.0
9
85
11
54
9
0
4
85
0.72
34252--34301
9
5.3
9
83
9
55
8
2
2
88
0.68
34253--34315
23
2.8
22
79
9
56
9
1
4
84
0.84
37487--37528
20
2.1
20
86
8
59
50
21
4
23
1.68
46247--46280
17
2.1
16
88
5
50
76
0
8
14
1.01
68137--68191
26
2.2
26
83
6
69
27
1
18
52
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94904--95260
178
2.0
178
100
0
714
30
19
24
25
1.98

Tables:   1

The End!