genome.fa.s7010.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007010.1 Hibiscus syriacus cultivar Beakdansim tig00018093_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  523506

Tables:   1   2   

This is table  1  of  2  ( 183 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10963--11141	7	25.6	7	98	0	304	25	46	13	14	1.81
16081--16273	7	27.6	7	96	0	305	26	46	12	14	1.80
31697--31764	30	2.3	30	89	5	102	19	38	16	26	1.92
35260--35303	21	2.1	21	91	0	70	45	2	0	52	1.13
38866--39096	113	2.0	113	94	0	408	25	12	12	49	1.76
39056--39105	20	2.5	20	96	0	91	12	12	14	62	1.56
39571--39610	19	2.1	19	95	0	71	12	10	12	65	1.49
39683--39724	21	2.0	21	100	0	84	9	9	14	66	1.44
39484--39826	113	3.1	112	90	1	501	26	11	14	47	1.77
40170--40238	24	2.9	25	79	18	76	52	2	1	43	1.25
40453--40556	23	4.2	23	75	15	100	33	19	8	38	1.82
40463--40566	53	2.0	53	96	0	190	32	17	9	40	1.82
41298--41337	20	2.0	20	90	0	62	35	22	27	15	1.94
47111--47175	2	32.5	2	100	0	130	0	49	0	50	1.00
47948--47996	22	2.2	23	78	7	57	2	44	0	53	1.12
50785--50826	15	2.7	15	82	10	50	11	2	7	78	1.04
57791--57824	16	2.1	16	94	0	59	17	0	20	61	1.34
64341--64381	20	2.0	21	85	9	57	21	29	19	29	1.98
65938--66374	218	2.0	218	100	0	874	27	21	19	31	1.97
74194--74233	21	1.9	21	90	10	64	17	5	2	75	1.10
88324--88363	20	2.0	21	95	5	73	67	5	0	27	1.11
88319--88424	18	5.8	18	78	17	112	65	2	1	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101091--101116	9	2.9	9	100	0	52	34	11	7	46	1.69
102659--102706	19	2.5	20	86	3	62	47	2	14	35	1.56
110098--110155	29	2.0	29	86	0	80	13	34	27	24	1.93
110199--110250	23	2.3	23	89	0	77	25	26	38	9	1.86
110206--110258	23	2.3	24	87	9	83	28	24	35	11	1.90
110276--110357	28	2.9	28	85	3	101	19	30	36	13	1.90
112800--113659	287	3.0	287	97	0	1623	38	15	15	30	1.89
113974--114106	68	2.0	68	90	0	212	51	24	10	13	1.72
120491--120548	29	2.0	29	100	0	116	13	31	6	48	1.69
122566--122619	23	2.3	23	100	0	108	18	27	27	25	1.98
124947--125332	192	2.0	194	98	1	758	38	16	19	26	1.92
127958--128003	19	2.5	18	82	6	65	26	0	6	67	1.15
127986--128050	31	2.1	31	88	0	94	23	1	10	64	1.33
130571--130609	20	2.0	21	85	10	55	28	0	30	41	1.57
132985--133018	3	11.3	3	87	0	50	0	61	0	38	0.96
135079--135305	114	2.0	112	98	1	436	26	18	22	32	1.97
139372--139419	23	2.1	23	88	0	69	37	12	8	41	1.73
140022--140141	61	2.0	62	90	5	190	34	6	12	46	1.68
141575--141890	156	2.0	158	98	1	609	29	23	20	25	1.99
150996--151063	26	2.6	26	90	2	100	38	11	22	27	1.89
152839--152892	28	2.0	27	88	3	81	48	3	7	40	1.49
153895--153926	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154040--154081	16	2.6	16	80	0	57	42	11	2	42	1.54
154106--154300	4	48.5	4	73	14	134	46	1	8	44	1.42
154106--154300	10	19.4	10	74	13	134	46	1	8	44	1.42
154723--154751	2	14.5	2	100	0	58	51	0	0	48	1.00
154974--155012	13	2.9	13	82	17	53	48	0	10	41	1.37
157442--157499	30	1.9	30	89	0	89	34	20	5	39	1.75
160257--160303	19	2.5	19	96	0	85	34	12	17	36	1.87
174325--174375	19	2.7	20	81	6	61	41	0	1	56	1.10
174325--174383	19	3.1	19	78	4	57	40	0	3	55	1.16
190584--190618	14	2.5	14	100	0	70	22	34	22	20	1.97
191292--191334	22	1.9	23	85	4	61	23	2	9	65	1.34
191478--191522	20	2.3	20	84	3	65	46	0	2	51	1.13
200985--201274	139	2.1	142	96	2	550	38	14	22	24	1.91
212694--212766	22	3.3	22	90	0	119	17	42	23	16	1.89
218460--218504	19	2.3	20	88	3	65	13	22	40	24	1.90
218460--218504	10	4.6	10	83	5	65	13	22	40	24	1.90
218902--218938	16	2.4	16	90	4	58	27	10	16	45	1.80
219012--219066	16	3.4	16	94	0	92	23	12	18	45	1.83
218840--219050	112	1.9	112	96	0	395	27	11	15	45	1.81
225134--225209	25	3.0	25	98	0	143	40	17	19	22	1.91
227622--227735	59	1.9	59	82	5	142	34	4	22	38	1.74
254368--254488	23	5.2	23	70	2	89	40	6	15	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258138--258188	22	2.5	20	79	17	52	52	3	9	33	1.53
258994--259030	20	1.9	19	89	10	58	45	10	24	18	1.81
261385--261444	30	2.0	30	93	0	102	23	10	33	33	1.88
271900--271995	42	2.3	42	85	3	122	28	28	33	10	1.90
271972--272115	21	6.9	21	75	9	89	24	24	43	8	1.81
272031--272171	42	3.4	41	76	5	131	19	20	46	13	1.84
272031--272208	63	2.8	63	86	0	167	20	20	44	13	1.85
272056--272208	21	7.3	20	75	7	108	20	21	44	13	1.85
274184--274259	38	2.0	38	85	7	102	48	0	3	47	1.20
275333--275366	2	17.0	2	100	0	68	50	0	0	50	1.00
280594--280844	130	1.9	130	88	0	376	38	13	11	36	1.81
281092--281181	26	3.5	26	87	6	148	48	3	2	45	1.31
281376--281412	17	2.1	19	90	10	60	67	5	2	24	1.25
284926--285012	43	2.0	43	95	0	156	28	22	19	28	1.98
285514--285558	19	2.4	19	88	7	65	46	31	2	20	1.62
288859--288904	6	7.5	6	81	13	58	0	47	0	52	1.00
297917--297943	13	2.1	13	100	0	54	22	25	14	37	1.93
300779--300831	24	2.2	24	90	6	81	50	7	20	20	1.72
300859--300903	23	2.0	23	86	0	63	73	6	8	11	1.25
303871--303911	22	1.9	21	90	5	64	26	0	2	70	0.99
303938--303990	26	2.0	26	85	0	70	28	20	24	26	1.99
305273--305314	22	2.0	21	85	4	57	50	2	0	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305376--305415	21	2.0	20	95	5	71	5	25	10	60	1.49
311224--311271	24	1.9	26	83	8	64	16	12	8	62	1.53
318119--318252	60	2.2	61	82	4	164	36	18	16	28	1.93
326684--326726	22	2.0	22	100	0	86	34	13	9	41	1.77
328755--328807	14	3.8	14	82	9	63	50	22	0	26	1.49
328743--328807	28	2.3	27	85	12	87	52	23	0	24	1.48
336925--336953	2	14.5	2	100	0	58	48	0	0	51	1.00
338494--338545	20	2.6	20	93	0	86	40	26	11	21	1.87
338536--338633	21	4.8	20	74	10	65	36	21	19	22	1.95
338601--338969	20	18.5	20	84	4	449	34	26	18	20	1.96
339651--339697	24	2.0	24	83	8	60	27	14	19	38	1.91
339872--339896	12	2.1	12	100	0	50	72	0	28	0	0.86
342180--342486	19	17.4	19	79	16	367	47	18	20	14	1.83
342180--342508	33	9.5	33	76	16	135	46	18	20	14	1.83
342208--342486	52	5.2	52	88	8	299	47	17	20	14	1.83
342247--342486	71	3.4	71	96	0	435	47	17	20	15	1.83
342180--342506	71	4.7	69	86	9	295	46	18	20	14	1.83
342515--342597	19	4.6	19	81	15	113	14	24	18	43	1.87
342704--342740	14	2.6	14	91	0	65	45	21	0	32	1.52
344663--344797	19	7.6	19	75	16	110	45	25	18	9	1.80
344719--344775	14	3.7	14	72	20	51	45	28	19	7	1.76
344700--344792	33	2.8	33	91	0	159	47	24	19	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344663--344797	52	2.5	54	77	18	149	45	25	18	9	1.80
344793--344901	19	6.3	19	73	20	112	7	18	29	44	1.76
344793--344884	33	2.8	33	93	3	150	7	18	28	45	1.76
344945--345692	93	8.1	93	98	1	1452	46	18	12	21	1.83
344945--345692	185	4.0	186	98	1	1452	46	18	12	21	1.83
344945--345692	278	2.7	278	98	0	1457	46	18	12	21	1.83
347399--347469	14	4.7	14	80	16	88	43	22	25	8	1.81
347413--347485	33	2.2	33	95	0	128	45	24	21	8	1.79
347624--347694	33	2.2	33	92	0	115	47	18	22	11	1.80
347876--347930	22	2.5	22	81	0	74	20	16	40	23	1.91

Tables:   1   2