genome.fa.s7010.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007010.1 Hibiscus syriacus cultivar Beakdansim tig00018093_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  523506

Tables:   1   2   

This is table  2  of  2  ( 183 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348076--348268	20	9.6	20	82	5	219	19	19	25	35	1.95
348076--348268	60	3.2	60	83	0	251	19	19	25	35	1.95
348324--348375	20	2.6	20	96	0	95	21	13	26	38	1.90
358364--358425	24	2.6	24	94	0	106	54	14	16	14	1.71
358766--358814	24	2.0	24	100	0	98	16	34	16	32	1.91
370170--370225	23	2.4	23	87	0	76	57	21	14	7	1.61
370183--370227	23	2.0	23	95	0	81	53	20	15	11	1.72
375683--375709	13	2.1	13	100	0	54	37	0	33	29	1.58
383597--383648	28	2.0	26	85	11	70	44	3	5	46	1.45
396649--396673	2	12.5	2	100	0	50	52	0	0	48	1.00
398779--398804	2	13.0	2	100	0	52	50	0	0	50	1.00
398813--398844	3	10.7	3	100	0	64	34	31	0	34	1.58
399964--400093	59	2.2	60	80	8	149	36	10	11	41	1.76
401539--401567	2	14.5	2	100	0	58	48	0	0	51	1.00
403463--403502	21	1.9	21	84	0	53	47	7	12	32	1.69
410199--410260	32	1.9	32	96	0	115	29	11	11	48	1.74
422282--422314	17	1.9	17	93	0	57	48	21	21	9	1.77
432927--433006	39	2.0	40	92	2	135	20	25	12	42	1.86
437227--437614	184	2.1	184	90	1	600	45	7	3	42	1.50
437689--437740	26	1.9	27	92	7	88	44	7	19	28	1.78
438126--438198	31	2.4	31	83	4	85	46	16	4	32	1.66
439481--439511	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439517--439556	19	2.1	19	95	0	71	37	7	15	40	1.75
446692--447144	94	5.1	90	85	10	535	30	20	17	31	1.96
446934--447144	80	2.5	81	82	12	239	28	20	18	32	1.96
447210--447251	20	2.1	20	90	0	66	26	14	23	35	1.93
447240--447321	38	2.2	38	88	0	119	14	6	35	43	1.70
454642--454686	20	2.3	19	84	3	54	35	0	2	62	1.08
454637--454692	29	2.0	30	83	13	75	37	0	1	60	1.07
454685--454794	3	36.7	3	94	0	193	63	0	2	33	1.09
455113--455748	113	5.6	113	95	0	1114	29	18	13	38	1.89
456500--456964	165	2.8	166	92	2	749	37	20	13	28	1.91
456500--456964	248	1.9	248	96	0	860	37	20	13	28	1.91
456500--456952	83	5.5	83	93	1	743	37	21	13	28	1.91
458105--458150	22	2.0	22	88	12	67	4	13	0	82	0.81
458102--458144	11	3.9	11	80	20	54	2	16	0	81	0.79
458100--458145	12	3.8	12	80	13	58	2	17	0	80	0.81
468775--468818	18	2.5	17	78	10	52	70	2	0	27	0.99
470483--470531	19	2.7	19	82	14	59	2	24	0	73	0.94
470969--471022	27	2.0	27	85	7	74	37	0	1	61	1.07
471015--471133	3	39.7	3	93	0	202	63	0	1	34	1.11
485559--485604	22	2.1	22	84	4	58	54	0	8	36	1.32
488754--488827	29	2.5	31	74	10	82	18	21	6	52	1.68
493860--493935	30	2.5	30	91	0	125	19	35	10	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503569--503634	31	2.1	32	94	2	116	36	6	10	46	1.63
515172--515228	28	2.0	28	89	0	87	33	1	21	43	1.63
516894--516931	18	2.1	18	90	9	60	47	0	0	52	1.00
516899--516997	44	2.4	42	80	12	114	46	1	1	51	1.14
519202--519244	19	2.3	19	88	4	61	62	0	6	30	1.21
519412--519446	16	2.2	16	89	0	52	62	5	14	17	1.49
521003--521186	43	4.4	43	69	16	109	24	20	30	25	1.98
520882--521284	127	3.2	127	86	6	543	25	17	32	25	1.97
521322--521388	26	2.4	28	87	7	93	43	14	11	29	1.82
521892--521951	24	2.2	28	86	13	83	43	10	10	36	1.72
522083--522204	65	1.9	64	81	11	151	46	10	12	30	1.75
522160--522221	28	2.1	29	88	5	90	38	16	8	37	1.78
522209--522310	52	2.0	52	92	3	170	36	18	13	31	1.90
522306--522353	25	2.0	24	84	12	62	52	14	8	25	1.69
522354--522432	29	2.8	27	81	12	97	45	17	10	26	1.80
522319--522394	40	1.9	39	84	7	100	50	18	9	22	1.75
522356--522425	29	2.4	29	90	2	106	45	15	11	27	1.80
522798--523020	104	2.2	103	84	8	294	39	12	20	28	1.89
523180--523296	35	3.3	34	83	9	153	35	12	17	34	1.88

Tables:   1   2

The End!