genome.fa.s7020.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007020.1 Hibiscus syriacus cultivar Beakdansim tig00018134_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95164

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3679--3731	25	2.1	26	89	3	81	22	13	26	37	1.91
36595--36635	17	2.7	15	88	11	57	70	0	9	19	1.14
44136--44852	46	15.4	46	79	5	661	22	18	15	43	1.88
44136--44852	138	5.1	138	80	5	731	22	18	15	43	1.88
44353--44476	57	2.2	57	85	4	162	25	20	16	37	1.94
49123--49177	28	2.0	28	100	0	110	21	20	32	25	1.97
49576--49600	2	12.5	2	100	0	50	48	0	0	52	1.00
50184--50927	46	16.4	46	82	3	821	22	20	14	42	1.88
52205--52277	20	3.6	20	75	12	60	35	15	21	27	1.93
52295--52367	19	3.7	19	77	10	65	32	15	21	30	1.94
52312--52367	22	2.7	21	86	10	80	33	14	21	30	1.93
52705--52911	55	3.8	55	84	3	267	35	12	20	32	1.89
53153--53244	47	2.0	46	89	2	139	41	6	21	30	1.78
53197--53874	81	8.4	81	85	3	837	35	11	24	28	1.90
57127--57823	46	15.4	46	80	7	694	21	19	15	43	1.88
57494--57823	91	3.6	91	80	8	341	20	19	15	43	1.87
59113--59167	20	2.8	20	78	10	58	36	14	23	25	1.93
59596--59806	55	3.8	55	88	4	291	35	12	19	32	1.90
60026--60909	81	10.9	81	87	1	1144	35	12	24	27	1.91
64695--64741	24	2.0	24	100	0	94	34	14	12	38	1.85
67884--67936	24	2.1	24	89	6	79	79	0	18	1	0.83
67885--67967	6	13.8	6	73	16	57	79	3	15	1	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73021--73225	55	3.8	53	81	5	214	37	13	15	34	1.86
73459--74383	81	11.5	81	84	2	1101	35	11	24	28	1.90
75801--76134	166	2.0	168	98	1	654	32	20	7	38	1.82
78016--78499	118	4.1	117	75	9	416	26	18	15	40	1.90
79940--80417	118	4.1	117	75	9	406	26	18	14	40	1.90
81851--82317	118	4.0	117	77	8	461	26	18	14	40	1.89
84318--84355	16	2.3	17	86	13	53	28	2	2	65	1.19
86666--87022	45	7.9	45	88	1	414	28	22	10	38	1.87
86916--87079	45	3.6	45	91	0	247	25	20	7	45	1.78
86728--87079	90	3.9	90	84	4	264	27	22	9	40	1.85
87131--87541	81	5.1	81	86	0	561	30	24	10	34	1.90
89881--89911	2	15.5	2	100	0	62	48	0	0	51	1.00
91767--92096	45	7.3	45	86	2	306	26	21	10	40	1.86
92139--92633	81	6.1	81	88	0	686	29	23	12	34	1.91
92139--92633	162	3.1	162	91	0	767	29	23	12	34	1.91

Tables:   1

The End!