genome.fa.s7022.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007022.1 Hibiscus syriacus cultivar Beakdansim tig00018158_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92957

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4675--4773	49	2.0	49	100	0	198	36	13	18	32	1.89
7729--7774	15	3.1	15	78	12	58	6	6	34	52	1.53
7738--7772	18	1.9	18	94	0	61	8	8	34	48	1.64
10313--10381	27	2.6	27	92	0	120	0	20	34	44	1.52
10310--10386	27	3.0	24	74	20	73	1	18	35	45	1.58
10874--10912	2	19.5	2	100	0	78	48	0	0	51	1.00
11191--11245	2	27.5	2	100	0	110	49	0	0	50	1.00
11496--11520	8	3.1	8	100	0	50	64	12	12	12	1.51
14283--14349	20	3.3	20	79	4	89	40	17	22	19	1.92
14280--14375	41	2.3	41	96	0	174	40	17	22	18	1.91
14283--14375	20	4.6	20	75	4	87	39	18	23	18	1.92
14364--14457	20	4.7	20	80	2	89	34	24	18	23	1.96
14361--14438	41	1.9	41	86	0	111	39	21	16	21	1.92
15021--15243	19	12.1	19	79	11	214	13	21	21	44	1.85
15131--15218	33	2.6	33	92	1	140	11	25	25	38	1.89
15186--15243	20	2.9	20	80	10	64	13	24	18	43	1.87
17296--17362	21	3.2	21	66	6	55	23	35	20	19	1.95
17240--17362	42	2.9	42	80	4	115	23	36	17	22	1.94
18118--18142	12	2.1	12	100	0	50	0	28	0	72	0.86
19620--19656	14	2.6	14	86	0	56	48	21	0	29	1.50
20204--20240	14	2.6	14	86	0	56	48	21	0	29	1.50
20791--20827	14	2.6	14	86	0	56	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21379--21415	14	2.6	14	86	0	56	48	21	0	29	1.50
19244--24025	588	8.1	589	97	1	9068	36	19	12	31	1.89
22430--22483	19	2.8	19	97	0	99	14	24	25	35	1.94
22569--22604	13	2.7	13	86	4	54	50	22	0	27	1.50
23154--23190	14	2.6	14	86	0	56	48	21	0	29	1.50
23742--23778	14	2.6	14	86	0	56	48	21	0	29	1.50
25641--25712	19	3.7	19	85	3	99	40	23	22	13	1.90
25680--25729	19	2.6	19	83	0	64	44	22	20	14	1.86
25724--25779	14	3.7	14	78	17	67	8	16	25	50	1.74
25719--25795	32	2.4	33	93	2	138	11	19	23	45	1.83
25738--25795	18	3.4	17	73	22	59	12	18	22	46	1.82
25780--25834	20	2.8	19	83	8	65	16	23	23	36	1.94
26307--26351	18	2.5	18	85	0	63	15	15	42	26	1.87
27667--27720	20	2.8	20	80	2	65	48	22	16	12	1.80
27954--27997	22	2.0	22	95	0	79	18	15	45	20	1.85
28185--28278	20	4.7	20	80	2	89	23	18	24	34	1.96
28165--28279	20	5.7	20	78	5	88	23	17	23	35	1.95
28207--28341	41	3.3	41	81	4	130	20	21	20	37	1.94
28268--28360	20	4.6	20	78	4	96	18	24	18	38	1.92
28268--28363	41	2.3	41	98	0	183	18	23	17	39	1.92
28886--28936	12	4.3	12	76	18	54	31	0	1	66	1.03
28925--28995	26	2.8	25	83	12	85	46	0	1	52	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28894--28999	12	8.7	12	73	18	85	39	0	1	58	1.09
28921--29012	13	7.1	14	71	19	67	40	0	1	58	1.05
29000--29069	18	3.6	20	78	20	69	37	1	0	61	1.05
29000--29047	19	2.4	21	76	20	57	41	2	0	56	1.11
31773--31910	47	2.9	47	90	1	204	48	7	11	31	1.68
41947--42024	38	2.0	40	81	16	94	30	2	21	44	1.66
44072--44123	10	5.2	10	92	0	77	19	5	0	75	1.01
44052--44119	20	3.3	20	85	2	73	14	5	2	76	1.09
60432--60489	31	1.9	31	82	10	75	24	12	12	51	1.72
63655--63743	39	2.3	39	86	3	117	30	22	15	31	1.95
70956--70981	12	2.2	12	100	0	52	15	30	0	53	1.42
80209--80480	136	2.0	136	100	0	544	44	15	16	22	1.85
83931--83968	15	2.5	15	86	0	58	15	26	31	26	1.96
91262--91312	16	3.2	16	75	8	59	41	0	0	58	0.98

Tables:   1

The End!