genome.fa.s7041.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007041.1 Hibiscus syriacus cultivar Beakdansim tig00018252_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  187453

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7363--7611	2	127.0	2	86	3	346	0	56	0	43	0.99
19296--19347	21	2.4	21	83	3	68	26	13	23	36	1.92
25432--25461	15	2.0	15	93	0	51	30	3	6	60	1.39
25659--25700	18	2.3	18	87	4	57	57	2	4	35	1.33
57310--57390	31	2.6	31	96	0	144	38	23	19	18	1.93
60704--60816	54	2.1	54	89	0	181	38	19	15	26	1.91
62416--62449	16	2.1	16	94	0	59	32	0	2	64	1.08
65040--65131	42	2.2	42	96	0	166	51	8	1	39	1.40
70235--70305	31	2.3	31	90	2	108	35	14	19	30	1.91
71280--71326	3	15.7	3	90	0	67	0	63	0	36	0.94
71274--71323	24	2.1	24	96	0	91	0	60	0	40	0.97
71684--71760	31	2.5	31	84	0	100	36	14	25	23	1.93
72869--72896	2	14.0	2	100	0	56	50	0	0	50	1.00
76940--76998	31	1.9	30	93	3	100	40	3	22	33	1.70
91194--91224	15	2.1	15	93	0	53	41	0	22	35	1.54
93068--94135	535	2.0	535	100	0	2136	26	27	20	26	1.99
95414--95554	36	3.9	36	83	3	176	39	19	21	19	1.92
95409--95554	72	2.0	72	95	0	265	41	18	21	18	1.91
108665--108707	21	2.0	21	81	0	50	30	30	25	13	1.94
108665--108838	67	2.6	67	86	5	217	27	27	27	17	1.97
109141--109212	29	2.5	29	93	0	117	38	9	12	38	1.76
109506--109573	22	3.0	22	97	2	127	19	26	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113876--114286	20	20.5	19	79	12	294	39	24	19	16	1.92
113957--114286	40	8.2	40	89	5	402	37	25	20	16	1.93
113957--114286	60	5.5	60	90	4	420	37	25	20	16	1.93
114391--114417	6	4.5	6	100	0	54	33	51	14	0	1.43
115175--115231	6	9.5	6	100	0	114	0	15	50	33	1.44
115342--115471	20	6.4	20	78	8	138	16	21	24	36	1.94
115342--115449	40	2.7	40	92	0	180	16	22	23	37	1.93
115355--115475	60	2.0	62	90	6	194	17	22	23	37	1.94
115355--115533	20	8.9	19	74	12	121	17	21	21	40	1.92
121182--121252	14	5.5	13	74	16	58	61	4	2	30	1.29
121183--121254	25	2.8	25	85	6	92	61	4	2	31	1.29
123098--123961	105	8.2	105	97	0	1559	21	22	19	35	1.96
123098--123961	419	2.1	420	95	0	1577	21	22	19	35	1.96
124761--125342	54	10.7	55	86	4	659	39	16	11	32	1.84
124766--125342	217	2.7	217	84	3	725	39	16	11	32	1.85
127315--127351	18	2.1	18	89	0	56	10	13	0	75	1.04
127333--127429	12	8.5	11	77	15	74	1	15	3	80	0.89
127333--127429	11	8.3	12	73	16	64	1	15	3	80	0.89
127322--127358	18	2.1	18	94	0	65	5	18	0	75	0.99
127345--127428	11	7.5	11	78	16	77	0	15	3	80	0.84
127351--127425	4	19.2	4	75	13	59	0	16	4	80	0.87
127351--127429	23	3.4	23	79	10	72	0	15	3	81	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127351--127435	42	2.0	43	86	13	108	0	14	5	80	0.90
127339--127461	54	2.3	53	80	10	142	3	15	4	77	1.05
128806--128856	21	2.3	23	80	9	63	60	7	15	15	1.56
131534--131604	14	5.5	13	74	16	58	61	4	2	30	1.29
131535--131606	25	2.8	25	85	6	92	61	4	2	31	1.29
137840--137963	3	40.7	3	86	3	176	36	0	0	62	1.07
138664--138692	13	2.2	13	100	0	58	0	31	62	6	1.22
139244--139279	19	1.9	19	94	5	65	22	0	5	72	1.05
139333--139365	15	2.3	15	89	5	50	54	3	0	42	1.15
151082--151123	19	2.2	20	91	4	68	30	4	11	52	1.59
151679--152929	52	24.1	52	97	1	2258	24	14	23	36	1.93
153546--154336	113	7.0	113	96	0	1366	36	14	20	28	1.92
154632--154744	3	37.7	3	84	7	149	36	0	0	61	1.08
155447--155475	13	2.2	13	100	0	58	0	31	62	6	1.22
156028--156063	19	1.9	19	94	5	65	22	0	5	72	1.05
166382--166413	9	3.6	9	91	0	55	9	21	0	68	1.17
166409--166447	3	13.0	3	100	0	78	33	0	0	66	0.92
168828--168935	42	2.6	42	85	8	143	46	18	14	20	1.84
176812--176852	3	14.0	3	89	5	66	34	2	0	63	1.08
179226--179332	40	2.6	42	85	10	143	45	18	14	20	1.85
179240--179332	41	2.3	40	89	9	136	49	16	13	20	1.79
187046--187452	3	142.3	3	76	14	398	0	38	0	61	0.96

Tables:   1

The End!