Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007043.1 Hibiscus syriacus cultivar Beakdansim tig00018259_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64518

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14498--14531
17
2.0
17
88
0
50
2
14
2
79
0.97
23747--23791
21
2.1
21
87
0
63
31
28
24
15
1.96
25496--25558
13
5.5
13
68
27
61
20
26
26
25
1.99
25484--25571
22
4.0
22
98
0
158
20
27
27
25
1.99
28619--28663
21
2.1
21
87
0
63
31
28
24
15
1.96
30375--30437
13
5.5
13
68
27
61
20
26
26
25
1.99
30363--30450
22
4.0
22
98
0
158
20
27
27
25
1.99
34988--35037
25
2.0
25
84
0
64
46
2
4
48
1.32
35066--35108
21
2.0
22
90
4
70
39
0
2
58
1.11
35069--35116
21
2.2
22
85
3
62
45
0
2
52
1.12
41023--41277
39
6.5
39
89
0
384
9
27
32
29
1.89
41023--41277
117
2.2
117
94
0
447
9
27
32
29
1.89
47020--47053
2
17.0
2
100
0
68
50
0
0
50
1.00
50914--50977
33
1.9
33
96
0
119
18
26
12
42
1.86
51190--51270
32
2.6
32
86
2
110
24
11
27
37
1.89
51667--51736
19
3.5
19
69
14
59
22
5
2
68
1.24
51644--51754
42
2.6
42
98
0
213
29
5
1
63
1.27
51847--51898
18
2.8
19
77
13
56
44
1
0
53
1.11
51957--52025
32
2.2
32
86
0
93
5
15
36
42
1.72
51971--52048
16
4.9
16
79
3
68
11
16
29
42
1.83
51968--52048
32
2.5
32
80
4
83
11
16
32
40
1.83
52012--52053
16
2.6
16
88
0
57
16
16
21
45
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52587--52661
31
2.4
31
84
8
91
37
17
2
42
1.63
55745--55811
2
33.5
2
96
0
125
50
0
1
47
1.10
59674--59698
2
12.5
2
100
0
50
48
0
0
52
1.00
62919--63034
61
1.9
61
85
0
160
29
11
22
37
1.89

Tables:   1

The End!