genome.fa.s7057.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007057.1 Hibiscus syriacus cultivar Beakdansim tig00018311_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88840

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25--54	11	2.7	11	94	0	51	0	33	0	66	0.92
18--51	17	2.0	17	88	11	52	2	32	0	64	1.08
18--54	6	6.3	6	84	15	51	2	32	0	64	1.07
5661--5703	15	3.1	14	80	9	52	58	0	0	41	0.98
7374--7488	60	1.9	60	91	3	187	25	21	14	38	1.92
7467--7554	40	2.2	40	100	0	176	28	29	11	30	1.92
7505--7722	81	2.7	80	84	1	283	26	24	13	35	1.93
7461--7634	40	4.3	40	78	4	161	28	26	12	32	1.93
7725--7831	20	5.4	20	70	16	71	41	17	12	28	1.86
7741--7832	19	4.7	19	74	12	89	39	17	13	30	1.87
7778--7850	19	3.8	18	74	12	65	38	15	13	32	1.86
7724--7852	39	3.3	39	79	12	138	40	16	11	31	1.84
8992--9034	10	4.5	10	80	11	54	72	0	0	27	0.85
8988--9027	18	2.2	18	90	0	62	70	0	0	30	0.88
10325--10369	15	3.0	15	86	0	63	13	71	8	6	1.31
17702--17738	3	12.3	3	94	0	65	0	32	2	64	1.07
18021--18256	42	5.6	42	76	4	197	25	20	27	27	1.99
18021--18256	84	2.8	84	79	2	240	25	20	27	27	1.99
18318--18836	42	12.4	42	79	6	478	21	18	26	32	1.97
18302--18836	84	6.4	84	81	5	553	22	18	26	32	1.97
18302--18766	162	2.8	165	81	4	508	22	18	26	32	1.97
20230--20316	36	2.4	36	90	1	140	41	11	19	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20523--20609	36	2.4	36	86	1	131	39	11	20	28	1.88
19991--20840	294	2.9	294	91	2	1289	30	13	19	36	1.90
21362--21838	259	1.8	258	82	2	607	27	11	22	39	1.88
22020--22089	36	1.9	36	88	0	104	42	10	15	31	1.80
23553--24084	271	2.0	269	87	2	762	26	18	19	36	1.94
34282--34323	22	1.9	22	85	9	59	7	2	35	54	1.41
37247--37323	31	2.5	31	80	2	91	27	31	27	14	1.95
37200--37323	63	2.0	63	82	6	153	25	29	28	16	1.97
38213--38265	5	9.8	5	76	15	52	7	22	50	18	1.72
38206--38266	17	3.3	17	79	20	77	11	22	47	18	1.80
38199--38265	22	3.0	22	93	4	107	11	23	46	17	1.82
38262--38350	9	9.3	9	75	11	79	29	28	28	14	1.95
38268--38350	19	4.3	19	80	8	80	30	28	26	14	1.95
38287--38350	30	2.2	28	94	5	110	29	28	28	14	1.95
38313--38351	21	1.9	21	94	5	71	33	25	25	15	1.95
44580--44656	31	2.5	31	80	2	91	27	31	27	14	1.95
44533--44656	63	2.0	63	82	6	153	25	29	28	16	1.97
45540--45582	22	2.0	22	100	0	86	9	23	48	18	1.76
45579--45677	9	10.3	9	77	10	90	29	28	27	15	1.96
45581--45678	19	5.1	19	80	13	101	29	28	25	16	1.97
45604--45678	29	2.5	31	91	8	129	29	28	26	16	1.96
48838--48867	15	1.9	15	93	6	51	76	3	0	20	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51581--51668	42	2.1	42	95	0	158	25	20	35	19	1.96
53526--53576	22	2.3	22	89	0	75	19	9	43	27	1.82
53690--53783	20	4.7	20	87	1	116	18	17	26	38	1.92
53695--53848	20	7.7	20	76	11	100	23	14	26	35	1.93
65864--65916	14	3.8	14	75	7	54	41	1	3	52	1.30
65866--65919	27	2.0	28	85	3	74	38	1	3	55	1.28
73437--73489	24	2.2	24	100	0	106	30	18	18	32	1.96
77594--77662	37	1.9	35	82	11	86	47	0	5	46	1.26
85438--85659	112	2.0	110	83	5	277	33	19	17	29	1.95
87100--87135	2	18.0	2	100	0	72	50	0	0	50	1.00
87545--87751	105	2.0	104	92	0	342	27	11	17	43	1.83

Tables:   1

The End!