Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007068.1 Hibiscus syriacus cultivar Beakdansim tig00018390_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  617230

Tables:   1   2   3   

This is table  3  of  3  ( 277 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
563609--563664
23
2.4
23
78
0
67
58
8
14
17
1.61
564010--564045
2
18.0
2
100
0
72
50
0
0
50
1.00
564209--564285
31
2.6
29
80
11
93
42
6
9
41
1.62
565495--565592
48
2.0
49
96
2
180
35
6
22
35
1.79
566589--566629
19
2.1
20
86
4
57
36
19
14
29
1.92
568490--568542
23
2.3
22
80
9
61
58
3
1
35
1.27
568572--568600
14
2.0
15
93
6
51
27
13
0
58
1.36
572720--572918
56
3.6
56
88
0
283
39
17
17
25
1.91
573470--573725
16
16.0
16
72
4
113
26
19
17
37
1.93
573584--573733
8
18.7
9
68
20
57
26
18
17
38
1.93
573577--573733
40
3.9
40
82
3
165
26
19
17
37
1.93
573572--573733
24
6.8
24
78
6
141
25
18
17
37
1.93
573641--573765
24
5.2
24
76
7
103
25
19
15
40
1.90
577367--577467
49
2.1
49
98
0
193
25
14
39
19
1.90
578538--578578
20
2.0
20
86
9
57
46
0
0
53
1.00
578493--578572
22
3.6
21
71
21
56
45
3
0
51
1.19
578671--578735
23
2.7
23
76
4
58
44
1
3
50
1.26
579415--579455
20
2.0
20
86
9
57
46
0
0
53
1.00
579370--579449
22
3.6
21
71
21
56
45
3
0
51
1.19
579548--579612
23
2.7
23
76
4
58
44
1
3
50
1.26
577983--580484
877
2.9
877
99
0
4912
41
8
8
41
1.66
580267--580380
28
3.7
31
75
13
94
46
0
1
50
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
580301--580341
14
2.9
14
77
0
55
41
0
0
58
0.98
580301--580380
33
2.6
30
84
9
92
45
0
2
52
1.14
580422--580472
23
2.2
23
82
0
57
45
1
1
50
1.24
580459--580495
19
1.9
19
94
0
65
40
0
2
56
1.13
580460--580528
19
3.6
18
76
18
61
46
1
1
50
1.19
580652--580708
22
2.6
22
84
10
73
52
0
3
43
1.18
581760--581838
24
3.3
24
94
0
131
21
16
20
41
1.90
581760--582094
48
7.0
48
73
6
225
25
20
17
37
1.93
581760--582094
8
41.9
8
69
7
88
25
20
17
37
1.93
581865--581990
24
5.2
24
79
7
121
28
21
13
36
1.91
584636--585017
189
2.0
189
97
0
719
38
14
9
37
1.80
587194--587294
49
2.1
49
98
0
193
25
14
39
19
1.90
599073--599098
2
13.0
2
100
0
52
50
0
0
50
1.00
599106--599143
19
2.1
19
85
5
51
52
21
2
23
1.59
608248--608277
5
6.0
5
100
0
60
20
0
0
80
0.72

Tables:   1   2   3

The End!