genome.fa.s709.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000709.1 Hibiscus syriacus cultivar Beakdansim tig00001378_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35436

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1954--2100	29	5.1	28	86	8	156	42	19	6	32	1.75
1954--2100	56	2.6	57	83	4	170	42	19	6	32	1.75
2108--2193	22	4.0	21	78	17	90	12	22	45	19	1.84
2115--2169	17	3.2	17	94	0	92	12	21	45	20	1.84
7685--7732	20	2.5	21	83	12	59	54	4	10	31	1.53
9082--9159	24	3.4	24	70	20	85	39	15	23	21	1.91
9105--9200	20	4.6	20	76	14	104	32	16	22	28	1.96
9082--9179	44	2.2	44	96	0	178	36	15	23	24	1.93
12799--12841	16	2.6	17	77	3	52	58	0	0	41	0.98
12895--12924	15	1.9	16	93	6	53	46	6	6	40	1.56
16166--16219	3	17.3	3	80	14	56	68	3	0	27	1.06
16189--16216	13	2.2	13	100	0	56	71	0	0	28	0.86
16568--16797	40	5.4	42	74	15	136	24	19	31	24	1.98
16423--16810	129	3.0	129	82	6	478	22	20	32	24	1.98
16843--16904	28	2.2	28	88	5	90	51	12	11	24	1.72
17295--17655	66	5.6	66	71	10	196	40	13	17	29	1.87
17551--17776	120	1.9	121	81	8	282	42	13	14	30	1.83
17855--17908	28	2.0	28	81	3	65	51	9	11	27	1.67
17876--18110	67	3.5	67	92	2	393	45	11	12	30	1.77
18064--18127	30	2.1	31	88	5	96	39	14	10	35	1.81
18074--18135	30	2.1	30	84	3	81	46	14	11	27	1.78
18115--18214	52	1.9	52	91	4	166	37	17	14	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18427--18512	37	2.4	35	76	5	93	34	15	19	30	1.93
18499--18730	105	2.3	101	82	8	256	37	11	19	31	1.88
19184--23372	4	1059.0	4	97	2	7958	25	0	25	49	1.50
24560--24597	20	1.9	20	88	0	58	2	15	10	71	1.25
25166--25213	20	2.5	20	89	3	71	37	8	25	29	1.85
30219--30265	3	15.3	3	80	12	51	68	4	0	27	1.08
32767--32811	23	1.9	24	86	4	65	71	0	2	26	0.98

Tables:   1

The End!