genome.fa.s7096.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007096.1 Hibiscus syriacus cultivar Beakdansim tig00018544_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  246292

Tables:   1   2   

This is table  1  of  2  ( 180 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2039--2096	24	2.4	24	100	0	116	18	24	10	46	1.80
9194--9250	22	2.6	22	97	0	105	36	19	24	19	1.94
9801--9832	11	2.8	11	95	4	55	6	37	0	56	1.25
14824--14913	28	3.1	27	76	16	74	41	11	10	37	1.74
16044--16252	103	2.0	103	99	0	409	44	12	8	35	1.72
19072--19100	2	14.5	2	100	0	58	51	0	0	48	1.00
19535--19605	2	35.5	2	100	0	142	49	0	0	50	1.00
21741--21765	7	3.6	7	100	0	50	44	0	24	32	1.54
28522--28574	19	2.7	19	82	2	61	33	16	11	37	1.85
28697--28746	20	2.5	20	96	0	91	38	28	8	26	1.84
36345--36384	21	1.9	21	90	10	64	17	22	17	42	1.89
36386--36452	20	3.3	20	95	0	125	38	19	20	20	1.93
36630--36691	18	3.0	22	69	26	62	27	38	16	17	1.91
37024--37072	20	2.5	20	86	0	71	34	24	20	20	1.96
37114--37163	20	2.5	20	83	0	64	18	16	28	38	1.91
37146--37185	20	2.0	20	100	0	80	10	15	20	55	1.68
37150--37193	20	2.2	20	87	0	61	13	13	20	52	1.74
39047--39190	20	7.5	20	86	9	210	38	21	20	19	1.93
39047--39228	40	4.9	40	79	14	210	39	20	20	18	1.93
39047--39228	94	1.9	93	91	1	292	39	20	20	18	1.93
39237--39283	20	2.3	20	88	0	67	21	19	23	36	1.95
39257--39338	33	2.5	33	81	2	101	13	18	21	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39814--39918	21	5.0	21	74	3	95	20	37	19	22	1.95
39811--39921	42	2.6	42	78	5	118	20	37	18	22	1.94
41280--41315	14	2.6	14	90	0	54	30	0	22	47	1.52
41417--41492	33	2.3	34	95	2	136	43	19	23	13	1.86
41430--41498	19	3.8	19	73	21	76	44	18	21	14	1.85
41507--41602	33	2.9	34	88	3	140	13	23	20	41	1.88
41574--41667	20	4.7	20	86	2	136	19	21	24	35	1.96
44083--44136	24	2.2	24	90	0	81	40	18	18	22	1.91
48753--48779	11	2.5	11	100	0	54	55	7	0	37	1.28
50659--50686	2	14.0	2	100	0	56	50	0	0	50	1.00
51346--51375	15	2.0	15	93	0	51	70	0	6	23	1.11
60777--60856	22	3.6	22	79	5	99	23	25	26	25	2.00
60781--60872	44	2.1	42	86	7	123	23	21	27	27	1.99
60777--60856	21	3.7	20	80	8	79	23	25	26	25	2.00
66655--66699	23	2.0	23	100	0	90	26	22	33	17	1.96
66734--66821	45	2.0	45	95	0	158	27	18	27	27	1.98
67457--67544	33	2.6	34	85	7	108	61	15	2	20	1.45
75578--75639	20	3.2	20	68	9	65	43	3	3	50	1.34
75577--75678	38	2.8	37	86	7	138	43	2	2	50	1.32
75807--75869	23	2.7	23	97	2	117	33	15	0	50	1.45
75900--75986	43	2.0	44	93	2	149	14	20	9	55	1.67
76243--76320	40	2.0	40	87	10	115	48	12	7	30	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76800--76845	18	2.7	17	86	6	67	36	6	28	28	1.82
81544--81650	42	2.5	42	93	0	178	23	7	11	57	1.58
81922--82028	30	3.5	31	76	17	84	46	0	1	51	1.11
82382--82432	15	3.4	15	88	0	84	37	19	5	37	1.76
82366--82436	30	2.4	29	95	2	124	32	16	7	43	1.75
84325--84384	29	2.1	29	96	0	111	38	26	10	25	1.87
87290--87358	20	3.4	20	71	13	61	34	27	18	18	1.95
87391--87628	20	11.7	20	75	11	171	39	24	18	17	1.92
87454--87626	41	4.2	41	90	1	249	39	24	18	17	1.92
87391--87605	82	2.6	82	85	5	260	39	24	18	18	1.92
87391--87635	61	4.0	62	77	9	218	38	24	18	18	1.93
87717--87764	21	2.3	20	79	10	60	22	27	16	33	1.96
87756--87806	20	2.5	20	87	6	77	39	23	17	19	1.92
88667--88720	24	2.2	24	90	0	81	22	18	18	40	1.91
91134--91367	20	11.7	21	90	3	337	33	25	22	18	1.96
91493--91529	14	2.6	14	86	0	56	48	21	0	29	1.50
92944--92983	21	2.0	20	86	13	57	25	15	32	27	1.95
92882--92993	42	2.7	41	75	8	109	22	17	37	22	1.94
93473--93561	20	4.3	20	85	5	115	38	20	17	23	1.93
93598--93677	19	4.2	19	85	9	101	11	16	25	47	1.79
93605--93677	38	1.9	38	94	0	128	8	17	26	47	1.75
93665--93692	14	2.0	14	100	0	56	7	28	21	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93795--94174	94	4.1	94	91	1	584	47	18	11	22	1.80
95916--96004	14	5.6	14	69	23	61	43	22	23	10	1.83
95929--95990	19	3.5	19	72	20	71	45	22	20	11	1.83
95870--96016	33	4.3	33	89	3	213	45	19	23	12	1.83
96022--96143	20	6.5	19	77	11	83	11	18	20	49	1.78
96065--96143	20	3.9	21	85	5	85	12	18	16	51	1.75
96679--96892	20	10.6	20	77	6	189	21	18	22	36	1.95
96681--96892	41	5.2	41	86	2	293	21	18	22	37	1.94
96678--96933	121	2.1	121	84	5	340	21	17	23	37	1.94
96901--96952	20	2.7	20	88	8	72	13	13	25	48	1.79
97002--97055	20	2.7	19	75	8	63	16	18	31	33	1.93
100115--100279	64	2.6	64	81	5	174	26	21	20	32	1.97
102831--103258	214	2.0	211	97	1	811	27	18	16	37	1.92
103953--104020	30	2.2	31	82	7	86	42	10	1	45	1.47
104474--104533	19	3.1	19	90	7	86	45	0	1	53	1.10
104490--104555	19	3.3	19	85	12	62	50	1	0	48	1.10
104521--104570	22	2.3	23	86	6	68	50	2	0	48	1.12
107563--107600	11	3.2	12	81	11	51	63	23	0	13	1.30
108764--108798	2	18.0	2	94	5	63	51	0	0	48	1.00
108933--108975	21	2.0	21	82	8	52	39	0	0	60	0.97
108956--108997	18	2.4	18	80	4	50	40	2	2	54	1.26
109811--109856	21	2.2	21	92	7	76	60	4	13	21	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111296--111629	162	2.0	163	96	2	618	47	7	6	38	1.58
113229--113301	2	37.0	2	94	2	130	50	0	0	49	1.00
115229--115260	3	10.7	3	100	0	64	34	0	0	65	0.93
116374--116621	32	8.4	32	77	18	286	36	0	10	52	1.39
116397--116439	22	2.0	22	95	0	77	37	0	11	51	1.39
116374--116733	54	6.4	60	79	17	252	35	0	11	52	1.39
116548--116589	22	1.9	22	100	0	84	35	2	14	47	1.57
116442--116562	18	7.4	18	64	20	77	33	0	11	54	1.37
116681--116723	22	2.0	22	100	0	86	34	0	13	51	1.42
116748--116806	31	1.9	31	89	6	93	40	6	8	44	1.61
117248--117302	21	2.6	21	94	0	92	14	10	9	65	1.47
122371--122431	17	3.5	17	72	12	52	49	4	3	42	1.40
123014--123043	3	9.7	3	92	7	51	33	0	0	66	0.92
123082--123124	12	3.6	12	87	0	68	20	46	20	11	1.82
124242--124271	2	15.0	2	92	0	51	46	0	3	50	1.18
125188--125502	65	4.8	65	88	1	427	30	22	16	30	1.96
125461--125536	37	2.1	37	94	0	134	38	18	18	25	1.93
125742--126089	65	5.4	65	88	1	457	27	13	24	34	1.93
129311--129345	2	18.0	2	94	5	63	48	0	0	51	1.00
129334--129390	29	1.9	30	89	10	91	36	3	8	50	1.50
129390--129587	69	2.8	67	82	9	186	44	3	5	46	1.42
129363--129591	36	6.5	33	74	16	119	43	3	6	47	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129575--129619	14	2.9	15	83	9	56	37	0	4	57	1.19
130742--130790	4	13.0	4	77	12	50	22	0	2	75	0.90
132393--132487	46	2.1	46	100	0	190	25	17	11	45	1.82
134466--135681	80	15.0	80	86	4	1475	33	23	18	24	1.97
136335--136398	25	2.5	25	87	7	85	43	4	4	46	1.45
136377--136561	69	2.7	68	81	7	214	44	3	6	44	1.47
136377--136561	33	5.3	35	81	11	204	44	3	6	44	1.47
136548--136589	14	2.7	15	85	10	50	38	0	4	57	1.20
137661--137693	2	16.5	2	93	0	57	45	0	3	51	1.16
137687--137735	20	2.5	20	75	15	57	18	0	6	75	1.00

Tables:   1   2