genome.fa.s7096.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007096.1 Hibiscus syriacus cultivar Beakdansim tig00018544_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  246292

Tables:   1   2   

This is table  2  of  2  ( 180 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137764--137836	6	12.2	6	71	15	53	19	2	0	78	0.88
137792--137836	13	3.5	13	79	11	56	22	2	0	75	0.91
137764--137846	22	3.5	22	73	19	60	20	2	0	77	0.89
137895--137956	21	2.9	21	79	13	56	19	1	3	75	1.02
139252--139340	34	2.7	31	75	6	79	41	1	1	56	1.14
139480--139533	17	3.2	17	76	2	56	38	0	3	57	1.17
141105--141219	21	5.5	21	80	8	126	20	32	24	22	1.98
141112--141219	42	2.6	42	86	0	153	21	31	23	24	1.98
141740--141846	34	3.1	34	86	0	151	57	4	1	36	1.31
142180--142649	128	3.7	128	93	2	793	32	22	24	20	1.98
142732--142772	8	5.2	8	82	5	57	36	29	0	34	1.58
148399--148443	21	2.1	21	87	0	63	31	28	24	15	1.96
149026--149060	18	1.9	18	88	11	54	54	5	17	22	1.64
149940--150246	149	2.1	149	99	0	605	27	17	20	34	1.95
150222--150266	23	2.0	23	86	0	63	20	26	26	26	1.99
152252--152292	16	2.6	16	84	0	55	39	0	24	36	1.56
153176--153220	21	2.1	21	87	0	63	31	28	24	15	1.96
153805--153839	18	1.9	18	88	11	54	54	5	17	22	1.64
154075--154103	2	14.5	2	100	0	58	51	0	0	48	1.00
154723--155026	149	2.0	149	98	0	590	27	16	20	35	1.94
155005--155049	23	2.0	23	86	0	63	20	24	28	26	1.99
157219--157266	24	2.0	25	83	4	62	41	0	2	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157648--157714	31	2.2	31	91	0	107	29	20	10	38	1.86
157655--157720	31	2.1	31	97	0	123	22	25	13	37	1.91
159526--159573	20	2.7	18	84	12	55	12	6	4	77	1.11
160358--160403	23	2.0	23	83	12	58	50	0	8	41	1.33
161857--161909	22	2.4	22	100	0	106	39	7	0	52	1.30
174006--174209	101	2.0	101	98	0	390	23	9	22	44	1.81
181168--181217	19	2.6	19	93	0	82	36	16	8	40	1.77
187570--187614	17	2.6	17	75	0	54	42	0	2	55	1.12
196718--196776	3	19.7	3	100	0	118	33	0	0	66	0.92
197408--197437	2	15.0	2	100	0	60	50	0	0	50	1.00
202349--202404	23	2.4	23	79	5	69	41	3	0	55	1.17
203791--203896	3	36.0	3	77	11	112	34	0	1	62	1.13
203792--203896	17	6.0	17	84	5	129	35	0	1	61	1.13
206202--206244	2	21.5	2	100	0	86	48	0	0	51	1.00
213312--213341	9	3.4	9	90	9	53	23	13	0	63	1.29
216869--216917	16	3.1	15	82	8	53	69	0	16	14	1.19
219333--219381	16	3.2	16	69	19	50	48	10	18	22	1.77
219361--219722	109	3.4	110	82	10	451	36	13	18	31	1.90
219297--219722	105	4.0	108	83	9	502	36	14	18	30	1.91
220080--220173	3	32.0	3	77	12	97	34	0	3	62	1.11
226094--226190	40	2.4	42	85	3	135	40	11	9	39	1.73
228663--228735	23	3.2	23	88	0	110	32	5	23	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229151--229223	23	3.2	23	90	3	103	34	4	19	42	1.70
229631--229703	23	3.2	23	92	0	119	34	5	21	38	1.77
230108--230180	23	3.2	23	94	0	119	34	4	21	39	1.73
228243--231411	477	6.5	478	89	5	4573	40	7	11	40	1.69
230598--230670	23	3.2	23	92	0	110	35	4	20	39	1.72
228243--231411	967	3.3	957	89	5	4606	40	7	11	40	1.69
231012--231149	66	2.1	66	100	0	276	39	4	21	34	1.73
231047--231129	43	1.9	43	95	0	148	40	3	20	34	1.70
231024--231162	23	6.2	23	84	5	176	37	4	20	37	1.73
231733--231805	23	3.2	22	84	7	92	42	19	2	35	1.65
232213--232262	23	2.2	23	92	0	82	42	22	2	34	1.65
231756--233174	491	3.0	457	89	7	2191	40	10	7	40	1.68
232680--232751	23	3.1	23	91	0	117	37	22	5	34	1.77
233754--233813	3	19.7	3	78	10	59	33	3	0	63	1.11
233752--233807	30	2.0	29	86	10	80	32	3	0	64	1.11
245151--245220	18	3.7	19	73	17	56	55	1	5	37	1.32

Tables:   1   2

The End!