Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007098.1 Hibiscus syriacus cultivar Beakdansim tig00018546_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92602

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2565--2602
14
2.5
15
83
8
51
60
5
5
28
1.40
2845--2902
25
2.3
26
72
3
64
43
8
0
48
1.34
3433--3496
30
2.1
32
82
5
78
18
4
14
62
1.48
3525--3594
23
3.0
23
75
10
70
31
14
12
41
1.83
10026--10064
20
2.0
20
84
0
51
23
7
23
46
1.78
10235--10295
20
2.9
21
85
7
70
19
26
32
21
1.97
19490--19523
2
17.0
2
100
0
68
50
0
0
50
1.00
21069--21124
19
2.9
19
77
17
62
37
19
25
17
1.94
21737--21783
4
11.2
4
82
17
60
23
0
2
74
0.93
21739--21783
9
4.8
9
82
17
56
22
0
2
75
0.91
21740--21779
21
1.9
21
100
0
80
22
0
2
75
0.93
21737--21785
25
2.0
25
92
8
82
24
0
4
71
1.03
21737--21785
13
3.8
13
84
10
66
24
0
4
71
1.03
22230--22264
18
1.9
18
94
0
61
28
0
5
65
1.15
22506--22574
9
7.3
10
86
6
76
34
0
0
65
0.93
22514--22574
3
20.0
3
93
3
104
36
0
0
63
0.94
24741--24798
28
2.1
27
84
6
73
32
5
1
60
1.29
31440--31482
21
2.1
21
83
12
54
51
2
30
16
1.57
35459--35510
10
5.5
10
80
11
56
84
0
13
1
0.70
35458--35510
18
2.9
18
83
5
70
83
0
15
1
0.74
35468--35493
11
2.4
11
100
0
52
84
0
15
0
0.62
35458--35510
9
5.8
9
78
12
54
83
0
15
1
0.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35863--35911
19
2.8
17
81
9
55
36
10
6
46
1.63
37075--37720
344
1.9
342
88
1
990
38
14
19
28
1.90
37075--37720
113
5.7
113
88
2
864
38
14
19
28
1.90
37635--37863
120
1.9
119
84
9
311
38
16
20
24
1.92
37764--37822
17
3.4
17
68
25
50
49
13
22
15
1.79
38072--38146
3
25.0
3
91
5
98
40
0
0
60
0.97
40387--40417
4
7.8
4
100
0
62
51
22
0
25
1.48
50828--50870
9
5.0
9
83
16
56
18
0
0
81
0.69
50836--50867
15
2.1
15
94
0
55
15
0
0
84
0.63
51765--51810
11
4.1
11
80
2
56
19
21
6
52
1.69
58677--58735
28
2.2
26
87
9
82
44
0
0
55
0.99
58764--58808
21
2.1
22
88
12
67
53
0
2
44
1.13
63230--63310
35
2.3
34
77
10
83
28
23
6
41
1.78
64154--64628
199
2.4
200
80
5
471
36
18
9
35
1.84
66131--66199
35
2.0
35
85
5
95
36
18
17
27
1.94
68054--68102
13
3.8
13
91
2
82
18
46
22
12
1.82
68032--68112
17
5.2
17
82
11
79
19
44
22
13
1.86
68102--68141
7
5.7
7
100
0
80
15
30
30
25
1.95
75320--75368
13
3.8
13
91
2
82
18
46
22
12
1.82
75298--75378
17
5.2
17
82
11
79
19
44
22
13
1.86
75368--75414
7
6.7
7
100
0
94
14
29
29
25
1.95
77789--77826
4
9.5
4
83
11
51
71
0
2
26
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77786--77826
21
2.0
21
85
9
57
70
0
2
26
0.99
86434--86463
15
2.0
15
100
0
60
20
13
6
60
1.55
88550--88611
12
5.2
12
96
0
115
25
8
32
33
1.85

Tables:   1

The End!