genome.fa.s7105.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007105.1 Hibiscus syriacus cultivar Beakdansim tig00018568_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  286207

Tables:   1   2   

This is table  2  of  2  ( 189 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138675--138724	2	25.5	2	91	4	84	46	0	0	54	1.00
139183--139245	31	2.0	31	93	0	108	12	19	26	41	1.87
139214--139325	20	5.5	20	74	4	107	16	19	25	38	1.93
139232--139305	21	3.6	21	77	3	96	20	18	27	33	1.96
139214--139328	41	2.8	41	98	0	221	17	19	25	38	1.93
139214--139365	82	1.9	81	84	8	209	17	19	24	38	1.93
139464--139491	5	5.6	5	100	0	56	21	57	21	0	1.41
139989--140015	6	4.5	6	100	0	54	0	14	51	33	1.43
140114--140167	22	2.5	22	90	0	90	37	24	18	20	1.94
140202--140257	20	2.8	20	100	0	112	46	21	21	10	1.81
146597--146625	11	2.6	11	100	0	58	37	0	31	31	1.58
151273--151301	11	2.6	11	100	0	58	37	0	31	31	1.58
156028--156079	20	2.5	20	81	9	61	75	1	5	17	1.10
158500--158559	18	3.3	18	71	11	59	50	5	13	31	1.63
161675--161721	19	2.4	20	86	13	71	38	36	10	14	1.81
163203--163239	19	1.9	19	88	0	56	62	0	0	37	0.96
167231--167352	47	2.5	47	80	9	138	74	1	3	20	1.04
167285--167412	41	3.1	41	79	14	129	66	0	2	31	1.04
167240--167354	8	13.4	8	66	18	54	73	1	3	20	1.06
167356--167432	2	40.0	2	80	12	72	57	0	1	41	1.07
168592--168682	40	2.5	35	85	8	110	27	8	24	39	1.84
168668--168901	36	6.6	36	77	12	218	39	13	20	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168702--168888	102	1.8	102	85	4	261	39	12	20	28	1.88
168966--169038	37	2.0	37	91	0	119	41	15	19	24	1.89
168939--169178	102	2.4	102	90	2	374	36	12	19	31	1.89
169087--169265	87	2.1	87	93	0	304	35	12	18	32	1.89
168985--169370	189	2.0	189	84	3	501	38	12	19	30	1.88
169522--169843	106	3.0	105	87	0	428	21	19	24	34	1.96
170453--170526	32	2.3	32	90	4	114	39	16	12	32	1.85
170465--170537	32	2.3	31	88	4	101	41	17	12	28	1.86
171450--171587	69	2.0	69	91	2	224	25	15	22	36	1.93
171661--171697	14	2.7	14	91	4	58	0	18	5	75	0.99
171661--171704	16	3.0	15	87	9	56	0	18	6	75	1.02
174855--174957	30	3.8	29	76	17	96	66	0	1	31	1.09
174973--175003	2	15.5	2	100	0	62	51	0	0	48	1.00
184716--184768	21	2.6	21	81	3	63	16	20	39	22	1.92
188317--188374	26	2.2	26	100	0	116	10	5	34	50	1.59
191158--191198	14	2.7	15	75	24	50	17	12	0	70	1.16
202520--203223	105	6.7	105	93	1	1167	32	25	18	22	1.97
202520--203223	317	2.2	315	93	1	1178	32	25	18	22	1.97
202520--203223	211	3.3	210	93	1	1176	32	25	18	22	1.97
212548--212583	16	2.2	17	95	5	65	30	0	25	44	1.54
218164--218196	3	11.0	3	100	0	66	33	0	0	66	0.92
223164--223207	3	14.3	3	81	13	54	65	2	2	29	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227685--227798	43	2.6	42	79	4	120	33	12	22	31	1.91
228935--229794	80	10.9	79	78	8	525	25	18	15	40	1.89
228970--229750	38	19.9	38	77	8	651	25	18	14	41	1.89
228935--229750	160	5.2	157	79	8	686	25	18	15	40	1.89
229715--230592	45	19.5	45	77	6	713	21	16	18	42	1.89
229715--230565	90	9.4	90	83	1	934	22	17	18	41	1.90
230977--231431	133	3.4	133	88	0	669	31	18	16	33	1.94
231394--231490	41	2.4	41	85	0	131	36	17	18	27	1.94
231249--231624	175	2.2	173	85	4	515	32	17	18	31	1.94
231435--232130	134	5.2	134	86	3	952	29	17	19	33	1.95
231602--231801	46	4.5	43	67	16	115	30	16	21	32	1.95
232320--232349	3	10.0	3	100	0	60	33	0	0	66	0.92
246796--246854	27	2.2	27	96	0	109	15	30	16	37	1.90
250081--250227	77	1.9	79	83	8	194	40	9	5	44	1.60
259071--259197	43	3.0	43	96	0	227	33	19	18	29	1.95
259071--259239	43	3.9	43	90	1	223	34	17	16	30	1.93
266274--266312	20	2.0	20	89	0	60	48	7	10	33	1.66
270120--270327	43	4.8	43	81	5	188	25	20	26	27	1.99
270163--270343	86	2.1	86	81	8	208	23	23	24	28	2.00
270712--270782	21	3.4	21	92	0	115	1	38	19	40	1.61
270772--270838	21	3.2	21	76	0	71	1	35	17	44	1.58
280334--280542	82	2.5	80	83	9	251	30	20	16	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280340--280542	41	4.9	39	72	13	142	31	20	16	32	1.95
280436--280607	83	2.1	82	81	3	193	32	24	13	29	1.94
281981--282013	12	2.5	14	80	19	52	72	0	27	0	0.85

Tables:   1   2

The End!