genome.fa.s7115.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007115.1 Hibiscus syriacus cultivar Beakdansim tig00018600_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120531

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4857--4920	21	3.4	20	66	29	59	31	4	18	45	1.70
4849--4955	35	2.9	36	88	5	162	32	5	17	43	1.72
5370--5401	16	1.9	17	93	6	57	37	6	21	34	1.79
9428--9488	21	3.2	21	65	29	64	34	4	18	42	1.71
9420--9541	35	3.4	36	88	6	185	33	4	18	43	1.71
11268--11297	2	15.0	2	100	0	60	50	0	0	50	1.00
22916--23040	65	1.9	64	84	7	164	25	19	24	31	1.98
23008--23060	19	2.7	20	85	8	74	16	16	35	30	1.92
24345--24423	9	9.4	8	77	20	65	70	0	3	25	1.03
24361--24423	3	21.7	3	77	20	55	71	0	3	25	1.01
24345--24425	35	2.3	34	84	14	103	71	0	3	24	1.02
24447--24475	13	2.1	14	93	6	51	82	0	3	13	0.79
25710--25758	19	2.6	19	76	0	53	69	0	2	28	1.00
25746--25785	19	2.2	18	86	4	53	60	2	2	35	1.24
25767--26078	38	8.4	37	78	13	247	45	7	4	42	1.52
25767--26078	75	4.2	73	78	13	266	45	7	4	42	1.52
26716--27770	84	12.7	83	75	9	886	24	20	25	29	1.99
26734--27715	164	6.0	163	89	2	1112	24	20	25	29	1.99
26716--27770	417	2.5	413	84	2	1278	24	20	25	29	1.99
30816--30862	19	2.4	20	96	3	87	68	10	10	10	1.41
32639--32714	9	9.4	8	71	25	54	71	0	3	25	1.03
32639--32716	11	7.0	11	77	20	74	71	0	3	24	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32639--32716	32	2.4	32	84	14	99	71	0	3	24	1.02
32738--32766	13	2.1	14	93	6	51	82	0	3	13	0.79
34001--34054	19	2.8	19	74	0	54	72	0	1	25	0.95
34042--34081	19	2.2	18	86	4	53	60	2	2	35	1.24
34063--34340	39	7.6	36	75	15	209	45	7	3	42	1.51
34101--34374	37	7.5	36	79	13	240	44	7	4	43	1.51
43835--43918	29	2.9	29	75	8	82	35	19	4	40	1.72
46135--46201	28	2.4	28	87	0	89	44	25	7	22	1.78
54129--54174	24	1.9	24	86	0	65	43	10	23	21	1.84
56011--56042	14	2.3	14	94	0	55	56	18	15	9	1.66
56025--56103	10	7.2	10	73	18	68	59	15	12	12	1.61
56008--56103	24	4.2	24	76	5	85	59	15	12	12	1.61
56069--56107	20	2.0	20	94	0	69	64	10	10	15	1.50
56913--57352	220	2.0	220	98	0	853	24	14	22	38	1.91
57321--57374	21	2.6	21	100	0	108	22	24	29	24	1.99
57503--57560	30	2.0	29	83	10	73	43	15	5	36	1.69
58534--58585	20	2.6	20	90	0	86	40	28	11	19	1.86
58641--58896	20	12.6	20	77	7	221	37	24	19	19	1.94
58641--58893	41	6.2	41	88	3	354	37	24	18	19	1.94
59453--59557	20	5.6	19	72	16	78	48	20	18	12	1.80
59453--59531	20	3.9	21	80	8	83	50	18	17	12	1.77
59513--59577	14	4.3	14	73	17	58	46	21	23	9	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59508--59588	33	2.5	33	93	0	135	46	22	20	9	1.80
59584--59695	19	6.1	19	75	12	108	14	21	18	45	1.85
61367--61739	94	3.8	95	88	7	552	20	13	18	47	1.81
61621--61651	11	2.8	11	100	0	62	0	9	16	74	1.07
61527--61739	105	2.0	105	97	0	399	18	12	18	50	1.77
63294--63329	14	2.6	14	95	0	63	33	0	22	44	1.53
63436--63494	19	3.4	19	71	22	65	45	16	22	15	1.84
63577--63677	19	5.5	19	74	15	95	15	21	20	41	1.90
63636--63663	14	2.0	14	100	0	56	14	21	21	42	1.88
63512--63718	106	2.0	106	87	1	299	14	23	19	42	1.89
63512--63691	33	5.2	33	82	9	225	13	23	19	43	1.86
63684--63757	20	3.7	20	69	16	62	24	17	25	32	1.97
65994--66020	14	1.9	14	100	0	54	7	11	29	51	1.64
67142--67418	20	13.8	20	87	3	333	21	18	20	39	1.92
67309--67437	41	3.2	40	83	9	145	20	18	23	37	1.94
67309--67437	61	2.1	62	91	2	208	20	18	23	37	1.94
67326--67460	61	2.2	61	84	5	166	22	17	24	35	1.95
67528--67581	20	2.7	19	75	8	63	16	18	31	33	1.93
70103--70176	20	3.7	20	83	3	94	29	24	27	18	1.98
70334--70393	29	2.0	29	90	6	93	45	16	6	31	1.74
72680--73462	407	1.9	407	96	0	1458	34	12	16	36	1.86
78817--78875	20	2.8	22	80	12	70	32	11	30	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79555--79608	23	2.3	23	87	0	81	22	18	25	33	1.97
81170--81276	24	4.5	24	74	4	99	48	16	14	20	1.81
81170--81278	48	2.3	48	80	0	137	48	16	14	20	1.81
86063--86103	22	1.9	21	85	5	55	46	2	0	51	1.14
86193--86238	17	2.8	17	75	18	53	41	6	0	52	1.27
89248--89279	16	2.0	16	100	0	64	31	12	12	43	1.80
90498--90569	36	2.0	36	100	0	144	33	11	27	27	1.91
115642--115751	45	2.5	45	86	1	141	38	8	22	30	1.84
117313--118297	101	9.9	99	75	10	733	40	14	9	36	1.79
117313--118189	204	4.4	197	76	11	637	40	13	9	36	1.78
118456--119430	101	9.8	99	74	9	531	39	13	10	36	1.79
118433--119182	200	3.7	198	76	9	633	39	13	9	37	1.77

Tables:   1

The End!