genome.fa.s7123.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007123.1 Hibiscus syriacus cultivar Beakdansim tig00018611_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76900

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6313--6618	150	2.0	150	95	0	551	27	16	20	35	1.94
6597--6640	23	1.9	23	85	0	61	22	27	22	27	1.99
13347--13650	150	2.0	150	95	0	547	27	16	20	35	1.94
20364--20665	148	2.0	149	94	1	536	26	16	21	35	1.95
22781--22809	14	2.1	14	100	0	58	48	0	13	37	1.43
24442--24514	29	2.6	29	93	4	123	41	8	17	32	1.79
26463--27301	182	4.6	182	83	4	971	44	10	14	30	1.79
26480--27301	181	4.5	182	84	3	987	44	10	14	30	1.79
27691--27741	19	2.7	19	90	0	75	41	0	17	41	1.50
27691--27749	19	3.0	20	82	12	68	42	0	16	40	1.49
30858--30883	13	2.0	13	100	0	52	46	15	7	30	1.74
31120--32604	199	7.5	199	91	0	2326	42	14	15	27	1.86
31120--32604	399	3.7	396	92	1	2323	42	14	15	27	1.86
31120--32604	598	2.5	598	91	1	2377	42	14	15	27	1.86
32462--32744	140	2.0	139	88	2	415	41	16	13	28	1.86
33095--33123	15	1.9	15	100	0	58	20	44	6	27	1.77
35664--35710	24	2.0	24	86	0	67	31	2	17	48	1.58
35927--36482	199	2.8	198	84	4	706	42	14	14	28	1.85
36341--36910	201	2.8	197	79	6	594	37	14	13	33	1.86
36877--36937	22	2.8	22	95	2	106	29	16	11	42	1.83
39156--39180	2	12.5	2	100	0	50	48	0	0	52	1.00
40506--41125	176	3.6	163	76	12	531	42	13	16	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40630--41125	176	2.8	178	84	4	701	41	14	16	27	1.86
41497--41553	23	2.4	23	79	2	78	36	15	10	36	1.82
41594--41640	23	2.0	23	91	0	76	36	19	8	36	1.82
41507--41668	87	1.9	87	96	0	297	30	14	12	41	1.83
44988--45039	20	2.6	20	96	0	95	23	25	26	25	2.00
45784--46006	103	2.2	103	93	1	376	26	12	22	37	1.90
46008--46085	23	3.3	23	81	1	93	24	20	23	32	1.98
51589--51801	103	2.1	101	90	1	336	27	14	23	35	1.93
51808--51885	23	3.3	23	81	1	93	24	20	23	32	1.98
55033--55081	20	2.5	20	93	0	80	36	12	20	30	1.89
55126--55166	20	2.0	20	90	0	64	31	21	14	31	1.94
57797--57868	20	3.7	20	83	1	83	36	6	20	36	1.80
57903--57942	20	2.0	20	90	0	62	32	20	15	32	1.93
70007--70070	26	2.5	26	92	0	101	34	9	25	31	1.87
76311--76415	53	2.1	49	89	7	156	39	11	12	37	1.79

Tables:   1

The End!