Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007124.1 Hibiscus syriacus cultivar Beakdansim tig00018613_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94632

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1475--1545
34
2.1
34
81
5
81
46
2
4
46
1.37
1683--1750
20
3.5
20
93
4
120
22
20
10
47
1.80
2544--2602
30
1.9
31
83
10
77
45
3
1
49
1.28
2674--2729
16
3.4
16
75
4
67
41
3
0
55
1.17
2674--2741
33
2.1
33
100
0
136
45
2
0
51
1.16
2690--2741
17
3.1
17
72
5
61
48
1
0
50
1.12
2689--2804
17
7.2
16
65
27
50
48
1
0
50
1.11
6286--6359
24
3.0
25
75
15
82
37
21
20
20
1.94
6937--6971
18
1.9
18
88
0
52
20
17
34
28
1.95
19385--19477
17
5.5
17
72
10
91
38
10
10
39
1.75
19384--19495
34
3.3
34
80
1
143
40
11
10
37
1.77
19380--19496
17
6.8
17
69
8
67
42
11
10
35
1.74
20272--20344
3
24.3
3
81
10
78
35
1
1
61
1.13
22417--22472
6
9.2
6
82
9
60
21
1
0
76
0.87
22523--22577
3
18.7
3
74
10
51
21
1
5
70
1.16
22441--22537
43
2.3
43
83
7
126
21
8
0
70
1.13
22466--22546
43
1.9
42
80
9
94
20
8
1
69
1.22
22523--22579
19
3.1
18
77
10
62
21
1
5
71
1.14
22523--22577
8
6.2
9
73
10
51
21
1
5
70
1.16
26408--27331
110
8.4
110
92
0
1434
34
23
17
25
1.96
27589--27985
84
4.7
84
87
0
508
34
24
18
22
1.96
28277--28349
3
24.3
3
78
10
69
36
1
1
60
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29458--29549
48
1.9
48
84
0
121
20
7
0
71
1.10
29569--29604
11
3.2
11
92
4
54
22
0
5
72
1.05
30118--30207
17
5.3
16
72
19
76
38
10
11
40
1.74
30099--30225
34
3.7
34
89
1
164
40
10
10
38
1.73
30128--30226
17
5.8
17
72
17
73
42
9
10
38
1.70
30541--30727
97
1.9
98
83
5
245
24
18
5
50
1.69
30630--30794
44
3.8
43
82
7
167
24
19
6
49
1.70
30630--30794
43
3.8
43
80
4
172
24
19
6
49
1.70
30647--30811
86
1.9
87
82
3
208
24
19
6
49
1.72
30630--30814
42
4.3
42
79
8
176
25
18
5
49
1.71
41152--41190
17
2.4
17
95
4
71
43
0
5
51
1.24
41707--41752
3
15.3
3
100
0
92
67
0
0
32
0.91
41709--41800
27
3.4
26
84
11
89
68
3
1
27
1.12
43032--43139
3
36.0
3
79
12
107
67
1
0
29
1.07
43039--43154
20
6.0
19
77
15
98
68
1
0
28
1.05
43385--43879
113
4.3
111
80
8
580
27
19
14
37
1.91
45036--45091
19
2.9
19
81
7
78
55
5
8
30
1.53
52816--52847
15
2.1
15
94
0
55
46
9
18
25
1.79
56913--56973
3
20.7
3
85
9
81
67
3
0
29
1.07
58227--58306
3
26.7
3
87
5
117
65
1
1
32
1.09
58590--58640
21
2.4
21
83
6
59
9
29
39
21
1.85
61085--61153
19
3.5
19
68
29
54
39
1
2
56
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67685--67763
17
4.4
19
71
18
53
36
0
3
59
1.16
69304--69404
42
2.4
42
94
0
175
23
32
20
22
1.98
69278--69404
42
3.0
42
87
2
157
23
33
19
22
1.97
69397--69448
21
2.5
21
81
12
70
15
34
28
21
1.94
69960--70066
34
3.1
34
87
0
160
52
4
4
38
1.43
74075--74221
73
2.0
73
100
0
294
44
14
13
27
1.82
77320--77375
20
2.8
19
76
15
51
55
3
3
37
1.35
83065--83109
20
2.2
20
96
0
81
46
2
6
44
1.42
83123--83196
16
4.8
15
73
23
57
50
0
0
50
1.00
83309--83379
29
2.4
28
81
9
88
46
5
7
40
1.54
83309--83422
31
3.8
30
78
9
108
47
3
5
43
1.43
83369--83453
31
2.7
31
81
0
107
49
2
3
44
1.32
83835--83873
20
2.0
20
89
0
60
30
25
10
33
1.89
84272--84314
20
2.2
20
95
0
77
32
32
11
23
1.90
84278--84321
20
2.2
20
87
0
61
36
36
6
20
1.79
85801--85889
37
2.4
37
88
1
133
11
11
38
39
1.77
85590--86132
248
2.2
252
90
4
857
22
11
27
38
1.88
87644--87691
2
24.0
2
100
0
96
50
0
0
50
1.00
89640--89697
29
2.0
29
96
0
107
62
15
5
17
1.50
93247--93298
22
2.4
22
86
0
68
21
28
23
26
1.99

Tables:   1

The End!