genome.fa.s7131.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007131.1 Hibiscus syriacus cultivar Beakdansim tig00018635_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132003

Tables:   1   2   

This is table  1  of  2  ( 146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1396--1449	18	2.9	18	89	5	81	33	22	25	18	1.97
1398--1449	19	2.8	19	91	2	79	32	23	25	19	1.97
1875--2162	54	5.3	54	86	0	378	28	17	20	33	1.95
1880--2196	108	2.9	108	84	2	289	28	17	20	32	1.96
1875--2196	162	2.0	162	82	3	398	28	17	20	32	1.96
2924--2958	3	11.3	3	87	6	52	34	0	2	62	1.10
4689--4794	47	2.2	47	93	5	176	26	8	13	51	1.69
5160--5287	55	2.3	56	94	2	222	30	4	10	54	1.54
5342--5434	2	47.0	2	97	2	179	49	0	0	50	1.00
17315--17389	16	4.6	16	85	11	91	80	0	10	9	0.92
17341--17390	11	4.5	11	79	20	59	82	0	10	8	0.86
17319--17390	34	2.1	34	89	5	110	80	0	11	8	0.90
17351--17396	24	2.0	22	91	8	74	80	0	10	8	0.91
17327--17390	16	3.9	16	88	8	92	81	0	10	7	0.88
18274--18611	136	2.5	136	91	2	542	34	17	22	24	1.95
18560--18644	35	2.4	35	100	0	170	43	12	22	21	1.86
18591--18825	105	2.2	105	97	0	445	40	16	19	24	1.91
20386--20418	15	2.2	16	89	10	52	27	0	3	69	1.03
20822--20931	49	2.2	49	100	0	220	28	9	13	49	1.73
21298--21418	57	2.1	58	95	3	217	30	4	9	54	1.55
21481--21536	2	28.0	2	100	0	112	50	0	0	50	1.00
21633--21678	24	1.9	24	100	0	92	39	4	6	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27503--27553	22	2.3	22	80	12	52	39	1	5	52	1.37
27595--27649	17	3.1	17	70	10	56	40	7	7	45	1.60
27676--27724	21	2.3	20	83	10	62	40	6	6	46	1.53
35318--35366	4	11.5	4	80	20	55	26	4	0	69	1.06
35318--35366	17	2.9	16	82	14	55	26	4	0	69	1.06
38948--39017	21	3.1	22	64	18	54	32	21	30	15	1.94
40147--40803	113	5.8	114	92	2	999	29	22	16	31	1.96
42471--42521	22	2.3	22	80	12	52	39	1	5	52	1.37
42563--42617	17	3.1	17	70	10	56	40	7	7	45	1.60
44667--44888	110	2.0	110	96	0	408	27	17	12	43	1.84
45826--45983	21	7.8	20	72	7	86	38	25	17	18	1.92
45950--46143	20	9.6	20	80	5	212	35	25	19	19	1.95
45950--46143	60	3.2	60	81	3	237	35	25	19	19	1.95
46524--46594	33	2.2	33	92	0	115	11	22	18	47	1.80
46673--46750	41	1.9	41	97	0	147	44	16	25	12	1.83
46674--46749	21	3.7	21	83	3	109	46	17	25	11	1.82
46748--46792	19	2.4	19	88	0	63	44	26	17	11	1.82
46788--46885	19	5.7	19	68	22	81	11	22	22	43	1.84
46810--46899	14	5.7	14	69	23	63	10	23	23	43	1.83
46793--46907	33	3.5	33	95	0	212	10	22	20	46	1.81
48603--49070	185	2.5	186	98	1	904	22	12	19	46	1.83
48603--49070	93	5.1	93	98	0	904	22	12	19	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49118--49232	19	6.3	19	81	10	141	46	28	15	8	1.75
49228--49362	19	7.6	19	73	16	110	11	20	22	45	1.82
49250--49306	14	3.7	14	77	20	60	10	21	22	45	1.82
49233--49327	33	2.9	33	90	0	145	9	20	22	48	1.77
51275--51310	14	2.6	14	95	0	63	33	0	22	44	1.53
51417--51514	19	5.4	19	83	13	134	46	17	21	14	1.83
51417--51529	53	2.2	53	96	1	210	46	17	22	14	1.84
51539--51691	33	4.5	33	73	16	150	14	22	16	45	1.84
51561--51777	19	12.4	19	76	19	231	14	21	17	46	1.83
51539--51749	52	4.0	52	97	0	395	14	22	16	45	1.84
51580--51777	33	5.8	33	75	16	181	14	21	18	46	1.83
54060--54084	12	2.1	12	100	0	50	0	28	0	72	0.86
54860--54899	22	1.9	21	90	10	64	27	7	40	25	1.82
54987--55216	20	11.5	20	84	1	219	20	18	24	36	1.94
55203--55285	21	4.0	21	73	6	78	25	16	24	33	1.96
55183--55281	42	2.4	43	77	11	100	21	18	23	37	1.94
59509--60149	213	3.0	214	98	0	1257	26	11	16	44	1.82
60794--60834	13	3.2	13	80	16	50	70	0	2	26	0.99
66200--66254	3	18.0	3	85	10	76	30	0	3	65	1.10
67464--67510	20	2.4	19	80	16	51	25	2	14	57	1.49
70193--70254	32	2.0	32	96	3	117	14	14	9	61	1.57
73412--73446	17	2.1	16	89	5	52	68	5	25	0	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74643--74680	4	10.0	4	83	11	53	50	23	0	26	1.50
74631--74675	16	2.8	16	83	6	56	51	26	0	22	1.49
75137--75374	106	2.2	105	81	11	256	30	20	12	36	1.90
75342--75445	34	3.0	36	79	8	108	31	20	12	35	1.90
75689--75855	57	3.0	57	85	3	232	29	10	14	44	1.80
75689--75870	29	6.5	28	87	4	215	30	10	14	45	1.78
75866--75969	52	2.0	53	94	3	183	32	13	17	36	1.89
75955--76025	35	2.0	35	91	0	115	43	8	11	36	1.71
76822--76903	28	2.9	28	80	10	96	21	12	15	50	1.77
76935--77130	40	4.5	41	70	18	123	24	33	18	22	1.97
77062--77172	40	2.7	39	75	8	105	26	33	17	23	1.96
77338--77392	3	18.0	3	85	10	76	30	0	3	65	1.10
78603--78649	20	2.4	19	80	16	51	25	2	14	57	1.49
81332--81372	16	2.5	17	80	11	50	60	0	0	39	0.96
81784--82403	260	2.4	257	88	7	880	26	11	20	40	1.87
81948--82445	265	1.9	264	85	6	616	26	13	19	39	1.89
87003--87049	20	2.3	21	81	3	60	29	12	14	42	1.83
87156--87197	21	2.0	21	90	0	66	26	21	9	42	1.83
87167--87211	21	2.1	21	88	8	65	24	24	8	42	1.83
87951--88042	42	2.2	42	88	3	132	22	20	11	44	1.84
88794--88842	21	2.3	21	85	0	71	46	22	14	16	1.82
89217--89312	48	2.0	48	95	0	174	47	15	13	22	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92505--92529	9	2.8	9	100	0	50	20	0	0	80	0.72
93036--93102	25	2.7	25	82	13	77	38	0	4	56	1.19
93038--93096	18	3.3	18	74	11	50	35	0	3	61	1.13
93036--93102	24	2.7	24	76	17	66	38	0	4	56	1.19
93561--93590	12	2.5	12	94	0	51	26	40	0	33	1.57
94492--94624	47	2.9	45	84	6	169	33	21	7	38	1.81
94728--94889	40	4.1	40	99	0	315	32	26	17	23	1.96
96407--96457	19	2.6	20	90	3	77	43	5	15	35	1.71
100520--100570	19	2.6	20	90	3	77	43	5	15	35	1.71
103286--103318	2	16.5	2	100	0	66	48	0	0	51	1.00
103539--103597	31	1.9	31	89	0	91	42	3	10	44	1.55
103621--104006	22	17.6	22	86	2	544	47	10	0	41	1.38
103993--104032	12	3.6	12	77	16	50	52	0	2	45	1.14
104353--104867	54	9.8	48	83	12	195	36	0	11	51	1.38
104387--104517	37	3.4	37	71	24	110	40	0	8	51	1.32
104372--104459	15	5.5	15	76	18	88	44	0	3	52	1.18
104439--105002	32	18.4	32	69	25	312	34	0	12	52	1.39
104498--104590	22	3.8	22	71	24	78	36	0	11	51	1.39
104462--104639	54	3.3	54	98	0	347	34	0	12	52	1.40
104415--105114	188	3.7	188	82	10	894	34	0	13	52	1.40
104520--104970	134	3.4	134	80	15	529	33	0	13	52	1.41
104682--104724	22	2.0	22	100	0	86	34	0	13	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104650--105114	54	8.6	54	81	9	579	33	0	13	52	1.40
104736--104778	22	2.0	22	100	0	86	34	0	13	51	1.42
104415--105019	242	2.5	241	90	6	903	34	0	12	52	1.40
104790--104832	22	2.0	22	100	0	86	34	0	13	51	1.42
104870--104933	26	2.5	24	97	0	92	28	0	17	54	1.43
104927--104980	14	3.6	14	72	18	54	37	0	5	57	1.22
104915--104965	14	3.1	17	70	18	54	33	0	11	54	1.37
104915--104998	18	5.1	17	70	21	72	33	0	10	55	1.34
104949--105099	80	1.9	80	95	0	275	32	0	14	52	1.42
105062--105104	22	2.0	22	100	0	86	34	0	13	51	1.42

Tables:   1   2