Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007131.1 Hibiscus syriacus cultivar Beakdansim tig00018635_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132003

Tables:   1   2   

This is table  2  of  2  ( 146 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105129--105187
31
1.9
31
89
0
91
44
10
5
40
1.60
106804--106837
17
2.0
17
88
0
50
73
2
0
23
0.97
107493--107613
32
3.4
32
66
31
84
58
11
1
28
1.42
107445--107654
76
2.8
76
91
4
352
58
12
2
26
1.47
107507--107639
44
3.3
43
65
33
105
55
15
1
27
1.49
109506--109547
11
3.9
11
87
3
59
80
2
2
14
0.90
109506--109547
22
2.0
22
90
4
68
80
2
2
14
0.90
115233--115266
17
2.0
17
88
0
50
73
2
0
23
0.97
115942--115979
19
2.0
19
89
0
58
55
13
0
31
1.38
115863--116083
76
2.9
76
92
1
363
59
12
1
25
1.43
118471--118512
17
2.4
17
96
4
75
73
0
0
26
0.83
119153--119326
76
2.3
75
85
5
226
58
9
2
29
1.44
120929--120962
15
2.2
16
94
5
61
8
14
14
61
1.55
121168--121213
11
4.3
11
78
15
51
78
6
4
10
1.08
121166--121205
21
2.0
20
90
5
62
82
5
2
10
0.91
124469--124502
15
2.3
15
94
0
59
5
29
23
41
1.78
126162--126212
5
10.2
5
93
0
84
60
0
1
37
1.08
126279--126309
15
2.0
16
93
6
55
70
3
0
25
1.02
126896--127083
67
2.6
73
80
11
219
56
12
0
30
1.40
126959--126996
19
2.0
19
89
0
58
47
15
0
36
1.46
126999--127032
13
2.5
13
85
4
50
73
2
2
20
1.09
126896--127118
76
3.1
74
82
9
246
56
11
0
31
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
128886--129421
158
3.4
155
82
5
594
28
19
5
46
1.72
129806--129842
14
2.6
14
86
0
56
40
24
10
24
1.87
130402--130515
60
1.9
60
85
7
160
37
5
23
33
1.77
130428--130588
60
2.7
60
80
12
147
39
5
22
32
1.77

Tables:   1   2

The End!