genome.fa.s7136.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007136.1 Hibiscus syriacus cultivar Beakdansim tig00018666_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94679

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3382--3419	16	2.5	15	91	4	58	73	0	0	26	0.83
4649--4697	25	2.0	24	84	8	62	57	8	8	26	1.56
5089--5121	2	16.5	2	100	0	66	51	0	0	48	1.00
6195--6281	29	3.0	29	96	0	156	35	10	16	37	1.82
8880--9044	82	2.0	82	90	0	258	36	12	16	33	1.86
16474--16521	23	2.1	23	88	0	69	85	4	6	4	0.83
16479--16535	26	2.2	26	81	6	62	82	5	3	8	0.93
16480--16551	12	5.9	12	75	15	60	80	5	2	11	0.98
17256--17285	13	2.2	13	94	5	51	66	0	0	33	0.92
18334--18363	13	2.2	14	94	5	53	40	13	26	20	1.89
19138--19171	18	1.9	17	88	5	50	64	5	5	23	1.38
21379--21419	18	2.3	18	82	0	55	68	0	14	17	1.22
21687--21789	2	51.5	2	78	14	79	56	0	3	38	1.24
21653--21809	42	3.9	41	77	17	152	57	1	7	34	1.34
21653--21809	38	3.9	39	76	18	137	57	1	7	34	1.34
21791--21835	15	2.9	16	80	6	56	71	0	8	20	1.12
23508--23575	33	2.1	33	85	0	91	41	13	20	25	1.88
23615--23678	21	3.3	21	65	24	59	42	12	20	25	1.87
23603--23680	36	2.2	36	95	0	138	37	11	21	29	1.89
23437--23684	101	2.5	102	80	6	290	40	10	20	29	1.85
25684--25863	95	1.9	95	95	2	326	30	18	18	32	1.95
26838--27021	74	2.5	75	87	9	276	25	23	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29818--29876	31	1.9	31	89	0	91	40	5	10	44	1.60
29901--29945	22	2.0	22	100	0	90	48	13	0	37	1.42
29899--30108	22	11.1	20	64	30	72	52	13	0	33	1.40
29899--29951	22	2.4	22	90	6	81	52	11	0	35	1.37
29891--31522	54	30.0	54	75	13	817	52	13	0	33	1.41
29923--31496	32	57.4	31	68	28	779	52	13	0	33	1.41
29891--31469	166	9.6	167	76	14	1166	52	13	0	33	1.41
30067--30108	22	1.9	22	100	0	84	50	14	0	35	1.43
30069--30117	22	2.2	22	85	3	62	53	16	0	30	1.43
30233--30274	22	1.9	22	100	0	84	50	14	0	35	1.43
30035--31451	220	6.5	220	86	8	1762	52	13	0	33	1.42
30236--30284	22	2.2	22	82	7	55	55	14	0	30	1.40
30289--30337	22	2.2	22	85	3	62	55	12	0	32	1.37
30343--30417	22	3.2	23	75	17	82	54	17	0	28	1.43
30425--30498	22	3.2	22	70	16	60	55	17	0	27	1.42
30535--30583	22	2.2	22	85	3	62	55	12	0	32	1.37
30587--30629	22	2.0	22	100	0	86	51	13	0	34	1.42
30589--30637	22	2.2	22	88	3	71	55	14	0	30	1.40
30641--30683	22	2.0	22	100	0	86	51	13	0	34	1.42
30643--30691	22	2.2	22	88	3	71	55	14	0	30	1.40
30805--30845	21	2.0	20	95	4	73	53	14	0	31	1.41
30857--30899	22	2.0	22	95	0	77	51	11	0	37	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30859--30907	22	2.2	22	85	3	62	55	12	0	32	1.37
30943--30985	22	2.0	22	100	0	86	51	13	0	34	1.42
30945--30993	22	2.2	22	88	3	71	55	14	0	30	1.40
31001--31074	22	3.2	22	70	16	60	55	17	0	27	1.42
29891--31496	134	11.8	134	80	11	914	52	13	0	33	1.41
31109--31151	22	2.0	22	100	0	86	51	13	0	34	1.42
31111--31159	22	2.2	22	88	3	71	55	14	0	30	1.40
31163--31205	22	2.0	22	100	0	86	51	13	0	34	1.42
31165--31213	22	2.2	22	88	3	71	55	14	0	30	1.40
31219--31293	22	3.2	23	75	17	82	54	17	0	28	1.43
31297--31339	22	2.0	22	100	0	86	51	13	0	34	1.42
31299--31347	22	2.2	22	88	3	71	55	14	0	30	1.40
31353--31427	22	3.2	23	75	17	82	54	17	0	28	1.43
31431--31531	22	4.5	22	71	7	94	50	9	0	39	1.36
31421--31578	69	2.3	67	84	6	203	50	6	0	43	1.29
31475--31593	15	7.5	15	79	14	132	49	2	0	47	1.14
33029--33073	18	2.4	18	81	3	54	66	0	15	17	1.25
34091--34162	2	36.0	2	100	0	144	50	0	0	50	1.00
39168--39196	9	3.0	10	90	10	51	79	0	0	20	0.74
42586--42631	21	2.2	21	100	0	92	19	23	19	36	1.95
45492--45533	23	1.9	23	85	9	61	28	7	28	35	1.84
53199--53338	54	2.7	51	80	10	146	31	25	24	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54385--54431	24	2.0	24	83	8	60	10	10	25	53	1.68
54395--54421	14	1.9	14	100	0	54	7	7	29	55	1.55
55180--55240	16	3.8	16	93	0	104	8	11	22	57	1.60
55308--55338	10	3.1	10	100	0	62	9	9	19	61	1.54
58758--58796	18	2.2	18	100	0	78	48	0	7	43	1.31
59156--59217	31	1.9	33	87	9	92	43	1	16	38	1.57
59198--59287	44	2.0	43	82	4	108	33	0	25	41	1.56
59787--59826	20	2.0	20	95	0	71	37	10	0	52	1.35
59787--59924	52	2.7	53	79	13	130	42	5	4	47	1.45
60499--60548	23	2.2	23	92	0	82	38	8	22	32	1.83
60462--60624	87	1.9	87	97	0	308	40	12	14	32	1.83
60624--61349	200	3.6	197	81	5	753	30	16	14	39	1.88
63737--64478	200	3.8	199	79	10	859	31	14	14	39	1.86
64422--64531	51	2.1	52	78	9	118	25	19	16	39	1.92
65981--66034	3	18.0	3	80	0	63	25	31	3	38	1.74
67510--68667	200	5.8	200	93	0	1937	31	16	15	37	1.90
67510--68667	399	2.9	400	93	1	1973	31	16	15	37	1.90
67510--68667	599	1.9	599	93	1	1984	31	16	15	37	1.90
68909--68952	19	2.3	19	96	0	79	56	11	0	31	1.35
70335--70544	65	3.2	64	80	11	207	24	19	25	30	1.98
71070--71118	2	24.5	2	100	0	98	51	0	0	48	1.00
72791--72820	14	2.1	14	100	0	60	33	20	13	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73121--73201	24	3.5	24	74	17	91	32	23	22	22	1.98
75174--75205	15	2.1	15	100	0	64	9	25	6	59	1.52
79019--79219	65	3.1	65	76	13	166	26	17	23	31	1.97
80411--80474	33	1.9	33	87	6	94	23	42	0	34	1.55
80509--80552	21	2.1	21	86	0	61	15	29	11	43	1.82
82785--82821	20	1.9	18	89	10	56	18	16	13	51	1.76
82747--83225	182	2.6	181	81	3	604	30	15	12	41	1.85
84076--84107	9	3.6	9	100	0	64	0	53	21	25	1.46
84076--84114	18	2.2	18	90	0	60	2	48	20	28	1.62
94169--94364	87	2.2	87	81	4	207	27	14	27	31	1.95

Tables:   1

The End!