genome.fa.s716.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000716.1 Hibiscus syriacus cultivar Beakdansim tig00001388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77000

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3874--3935	22	2.8	23	79	15	60	51	3	6	38	1.44
11589--11614	2	13.0	2	100	0	52	50	0	0	50	1.00
14475--14522	20	2.3	21	96	3	89	31	6	33	29	1.82
17843--17960	43	2.7	43	81	3	121	53	5	17	23	1.64
25654--25725	30	2.4	30	92	0	117	30	25	20	23	1.99
25712--25899	31	6.0	31	76	13	179	31	18	18	31	1.95
25746--25902	63	2.5	63	97	0	296	30	17	17	33	1.94
27057--27210	64	2.4	64	76	12	147	26	19	20	33	1.96
32744--32776	8	4.1	8	92	0	57	12	27	15	45	1.81
34489--34857	20	18.5	20	85	4	458	34	26	18	20	1.96
35540--35586	24	2.0	24	87	8	69	25	14	21	38	1.92
35761--35785	12	2.1	12	100	0	50	72	0	28	0	0.86
38067--38156	34	2.7	33	88	6	128	46	20	20	13	1.83
38067--38319	33	7.5	33	77	18	149	46	18	21	13	1.83
38095--38278	52	3.6	52	84	14	235	47	17	22	13	1.82
38172--38259	14	5.6	14	67	23	50	47	19	21	11	1.80
38067--38319	85	3.0	85	88	7	365	46	18	21	13	1.83
38134--38297	66	2.4	69	88	10	248	47	17	21	13	1.82
38067--38319	52	4.9	52	81	16	216	46	18	21	13	1.83
38326--38427	19	5.6	19	85	12	151	14	23	17	44	1.86
38534--38570	14	2.6	14	91	0	65	45	21	0	32	1.52
40544--40600	14	3.7	14	77	20	60	45	22	21	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40525--40617	33	2.8	33	95	0	168	47	21	20	10	1.80
40488--40622	19	7.6	19	76	16	128	45	23	19	11	1.82
40618--40746	19	7.3	19	73	17	116	9	17	27	45	1.78
40618--40709	33	2.8	33	93	3	150	7	18	28	45	1.76
40778--41244	93	5.0	93	99	0	918	46	19	12	21	1.83
40778--41244	185	2.5	186	99	0	918	46	19	12	21	1.83
42947--43036	14	5.7	14	73	23	72	42	22	25	10	1.84
42939--43053	33	3.5	33	92	0	194	45	20	23	11	1.83
42946--43027	19	4.9	18	73	21	72	43	21	25	8	1.81
43070--43124	14	3.6	14	73	21	56	9	25	23	41	1.83
43054--43124	33	2.2	33	94	0	124	8	22	25	43	1.81
43065--43146	33	2.5	33	89	2	119	9	25	21	42	1.84
43077--43165	20	4.8	20	72	19	75	12	24	19	43	1.85
43245--43315	33	2.2	33	89	0	106	47	18	21	12	1.81
45549--45663	60	1.9	61	83	1	151	36	10	9	43	1.72
46681--46722	16	2.6	16	81	11	50	57	2	0	40	1.12
46868--46909	15	2.9	14	85	3	57	35	2	19	42	1.64
46928--46961	14	2.4	14	90	0	50	35	11	14	38	1.83
47329--47372	23	2.0	22	95	4	79	54	0	0	45	0.99
47330--47382	23	2.4	23	87	6	74	54	0	0	45	0.99
47440--47482	8	5.6	8	78	10	54	51	0	0	48	1.00
47413--47491	30	2.5	33	85	10	110	49	0	1	49	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47440--47502	22	2.9	21	81	11	65	50	0	0	49	1.00
47311--47515	30	6.8	31	73	17	96	50	0	0	48	1.11
49846--49910	23	2.9	23	80	11	73	47	7	21	23	1.76
53665--53697	3	11.0	3	100	0	66	66	0	0	33	0.92
53752--53987	130	1.8	130	86	3	341	23	24	15	36	1.93
58071--58124	21	2.6	21	77	13	58	46	3	0	50	1.19
58853--58891	2	19.0	2	94	5	69	48	2	0	48	1.15
63013--63088	36	2.1	36	97	0	143	43	2	10	43	1.53
67449--68022	112	5.1	112	93	0	961	45	13	15	25	1.83
67894--68363	202	2.5	187	83	7	531	44	13	14	27	1.82
68132--68185	20	2.7	20	97	0	99	40	22	20	16	1.91
67948--68367	202	2.1	202	88	1	619	43	13	15	27	1.85
68983--69053	23	3.1	23	91	0	115	38	18	8	35	1.81
73256--73364	29	3.8	29	90	4	177	18	21	14	45	1.84
73251--73364	57	2.0	58	91	5	187	18	20	14	46	1.84

Tables:   1

The End!